RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 GFRA3O60609 400 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 POU3F2P20265 443 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 SSTR4P31391 388 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 HTR3AP46098 478 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 FOXK1P85037 733 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 AHSA2Q719I0 299 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CPEB2Q7Z5Q1 589 aaKnown RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 ENDOVQ8N8Q3 282 aaKnown RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 GOLM1Q8NBJ4 401 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 DNAJA3Q96EY1 480 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PIGUQ9H490 435 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CDCP1Q9H5V8 836 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ZNF160Q9HCG1 818 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 BRD7Q9NPI1 651 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CMTM6Q9NX76 183 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ABCG2Q9UNQ0 655 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ASB1Q9Y576 335 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 A0A1W2PR48 441 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 UNC119BA6NIH7 251 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SOX14O95416 240 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ZGLP1P0C6A0 271 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ATP12AP54707 1039 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 MISPQ8IVT2 679 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 CHERPQ8IWX8 916 aaKnown RBP9.18□□□□□ -0.94
LIG3-216ENST00000593099 KLHDC8BQ8IXV7 354 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 HSPBAP1Q96EW2 488 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 MAGIXQ9H6Y5 334 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 TMEM185BQ9H7F4 350 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ASIC5Q9NY37 505 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 PILRBQ9UKJ0 227 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 BTBD3Q9Y2F9 522 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 CNOT1A5YKK6 2376 aaKnown RBP9.18□□□□□ -0.94
LIG3-216ENST00000593099 H3BML4 177 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 LINC00271P0C7V0 271 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 PRAMEF20Q5VT98 475 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 C6orf89Q6UWU4 347 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 CA13Q8N1Q1 262 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 NT5CQ8TCD5 201 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 TSEN15Q8WW01 171 aaKnown RBP9.18□□□□□ -0.94
LIG3-216ENST00000593099 ELP4Q96EB1 424 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SLC41A3Q96GZ6 507 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 OR5B2Q96R09 309 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SSR3Q9UNL2 185 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SH3PXD2BA1X283 911 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 CD2P06729 351 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 NUDT7P0C024 238 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SLC6A9P48067 706 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ARFIP1P53367 373 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 KCNJ10P78508 379 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SLC14A1Q13336 389 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 DEFB109BQ30KR1 87 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 PDZK1Q5T2W1 519 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 C6orf52Q5T4I8 152 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 CORO6Q6QEF8 472 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ELMOD2Q8IZ81 293 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 GPR137CQ8N3F9 429 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 OR1J4Q8NGS1 313 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 SLC45A3Q96JT2 553 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 ZNF597Q96LX8 424 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 TRNT1Q96Q11 434 aaKnown RBP9.18□□□□□ -0.94
LIG3-216ENST00000593099 GPER1Q99527 375 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 COMMD4Q9H0A8 199 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 PCOLCE2Q9UKZ9 415 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 TMPRSS11EQ9UL52 423 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 PCDHGA8Q9Y5G5 932 aa9.18□□□□□ -0.94
LIG3-216ENST00000593099 TPRP12270 2363 aaKnown RBP9.18□□□□□ -0.94
LIG3-216ENST00000593099 SULT2B1O00204 365 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 TMPRSS11DO60235 418 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 TACSTD2P09758 323 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SELENOVP59797 346 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 ZFP69Q49AA0 526 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SLC35F1Q5T1Q4 408 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 LCN8Q6JVE9 175 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 UTS2BQ765I0 119 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 VTCN1Q7Z7D3 282 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SPNS2Q8IVW8 549 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 WDR20Q8TBZ3 569 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 IPCEF1Q8WWN9 437 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 C16orf58Q96GQ5 468 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 ERMAPQ96PL5 475 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 SERHL2Q9H4I8 314 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SERHLQ9NQF3 203 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 CCM2LQ9NUG4 571 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 RIMS3Q9UJD0 308 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 AHCTF1Q8WYP5 2266 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 EME2A4GXA9 379 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 PCDH17O14917 1159 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 FMO6PO60774 539 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 PRAMEF10O60809 474 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 OR5F1O95221 314 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 OXSR1O95747 527 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 DDAH2O95865 285 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SERPINA3P01011 423 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 ARAFP10398 606 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 FOLR1P15328 257 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 ZNF43P17038 809 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 DNASE1L1P49184 302 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 SELENOWP63302 87 aa9.17□□□□□ -0.94
LIG3-216ENST00000593099 CSNK2A1P68400 391 aaPredicted RBP9.17□□□□□ -0.94
LIG3-216ENST00000593099 GINS1Q14691 196 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms