RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	AIRE	O43918	545 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	HS6ST1	O60243	411 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	PCDHGA12	O60330	932 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	CT62	P0C5K7	136 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC15A1	P46059	708 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	EXOSC6	Q5RKV6	272 aa	Known RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	DGAT2L6	Q6ZPD8	337 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	RABEPK	Q7Z6M1	372 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	KMT5C	Q86Y97	462 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	METTL27	Q8N6F8	245 aa	Predicted RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	CELF2-AS1	Q8N7Q2	184 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	SPPL2A	Q8TCT8	520 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF675	Q8TD23	568 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	DOK4	Q8TEW6	326 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	CTHRC1	Q96CG8	243 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	MMAB	Q96EY8	250 aa	Predicted RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	RNF170	Q96K19	258 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	ACTRT3	Q9BYD9	372 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	GABARAPL1	Q9H0R8	117 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF768	Q9H5H4	540 aa	Known RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	SMURF2	Q9HAU4	748 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	BCL2L10	Q9HD36	194 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	THSD1	Q9NS62	852 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	MAT2B	Q9NZL9	334 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC6A14	Q9UN76	642 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	RABL2B	Q9UNT1	228 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	C19orf53	Q9UNZ5	99 aa	Predicted RBP	14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	SEC16A	O15027	2179 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318		A0A087WV62	115 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	CPED1	A4D0V7	1026 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318		H0YIG0	161 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	ARHGAP33	O14559	1287 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	HYAL3	O43820	417 aa	Predicted RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	PLOD3	O60568	738 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	TRIM3	O75382	744 aa	Predicted RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR2B3	O76000	313 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	IFI6	P09912	130 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	NR2F1	P10589	423 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	SOX6	P35712	828 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	ANXA11	P50995	505 aa	Known RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	IGLV3-21	P80748	117 aa	Predicted RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	PUM1	Q14671	1186 aa	Known RBP eCLIP	14.33	□□□□□ -0.11	1e-11	■■□□□ 11.6
DDX39A-209	ENST00000589318	TMEM71	Q6P5X7	295 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	SHQ1	Q6PI26	577 aa	Known RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	WDR53	Q7Z5U6	358 aa	Predicted RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	B3GNT8	Q7Z7M8	397 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	EID2	Q8N6I1	236 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC16A11	Q8NCK7	471 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	GEMIN6	Q8WXD5	167 aa	Known RBP	14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	PHOX2B	Q99453	314 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	CUTC	Q9NTM9	273 aa		14.33	□□□□□ -0.11
DDX39A-209	ENST00000589318	ERVH48-1	M5A8F1	160 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	PDE9A	O76083	593 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	MT-ND2	P03891	347 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	SLC35E2	P0CK97	266 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	PRKACG	P22612	351 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	MAP2K4	P45985	399 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	ARL4D	P49703	201 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	CRISP3	P54108	245 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	CCL7	P80098	99 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	ERV3-1	Q14264	604 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	LPAL2	Q16609	132 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	ESCO2	Q56NI9	601 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	PRAMEF17	Q5VTA0	474 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	TIGD3	Q6B0B8	471 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	HEPHL1	Q6MZM0	1159 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	CDC73	Q6P1J9	531 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	SLC35A4	Q96G79	324 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	COL21A1	Q96P44	957 aa		14.33	□□□□□ -0.12
DDX39A-209	ENST00000589318	TOX3	O15405	576 aa	Predicted RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	CTNS	O60931	367 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	CDC123	O75794	336 aa	Predicted RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	SLITRK5	O94991	958 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ZIC2	O95409	532 aa	Predicted RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	CER1	O95813	267 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	RPLP0	P05388	317 aa	Known RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	NT5E	P21589	574 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	GTF2E2	P29084	291 aa	Known RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	AVPR1B	P47901	424 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	KCNJ5	P48544	419 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	MASP1	P48740	699 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	LAPTM4A	Q15012	233 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ANGPT1	Q15389	498 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	TBRG1	Q3YBR2	411 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	COMTD1	Q86VU5	262 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ZNF595	Q8IYB9	648 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ZNF540	Q8NDQ6	660 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	OR51Q1	Q8NH59	317 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	BBS10	Q8TAM1	723 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ZFAND1	Q8TCF1	268 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ADAMTS18	Q8TE60	1221 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	ZNF501	Q96CX3	271 aa	Predicted RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	SLC38A1	Q9H2H9	487 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	TMEFF2	Q9UIK5	374 aa	Predicted RBP	14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	RNF6	Q9Y252	685 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	KMT2E	Q8IZD2	1858 aa		14.32	□□□□□ -0.12
DDX39A-209	ENST00000589318	DSPP	Q9NZW4	1301 aa		14.31	□□□□□ -0.12
DDX39A-209	ENST00000589318	NUP210L	Q5VU65	1888 aa		14.31	□□□□□ -0.12
DDX39A-209	ENST00000589318	BLACE	A4D250	179 aa		14.31	□□□□□ -0.12

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms