RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FAM110BQ8TC76 370 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 PPP3R2Q96LZ3 170 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 MS4A4EQ96PG1 132 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 PIGQQ9BRB3 760 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 C1orf50Q9BV19 199 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 PINK1Q9BXM7 581 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 DLL4Q9NR61 685 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 SIRT3Q9NTG7 399 aaPredicted RBP18.44■□□□□ 0.54
SHMT1-209ENST00000582653 ATP6V1HQ9UI12 483 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 MED12LQ86YW9 2145 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 IGLV3-32A0A0A0MS00 114 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 TMEM114B3SHH9 223 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 SCAMP2O15127 329 aaKnown RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 SKAP2O75563 359 aaPredicted RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 SMNDC1O75940 238 aaKnown RBP eCLIP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 OXSR1O95747 527 aaPredicted RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 BPGMP07738 259 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 LAMP1P11279 417 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 OCRLQ01968 901 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 FAM27E3Q08E93 113 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 PTGR1Q14914 329 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 C6orf136Q5SQH8 315 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 CCNJQ5T5M9 372 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 VWA1Q6PCB0 445 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 EMBQ6PCB8 327 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 R3HCC1LQ7Z5L2 792 aaKnown RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 CNEP1R1Q8N9A8 125 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 FAM120BQ96EK7 910 aaKnown RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 ZNF845Q96IR2 970 aaPredicted RBP18.43■□□□□ 0.54
SHMT1-209ENST00000582653 NPAS1Q99742 590 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 VDAC3Q9Y277 283 aa18.43■□□□□ 0.54
SHMT1-209ENST00000582653 A0A1W2PPR1 153 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 A0A1W2PRB8 838 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 ALG1L2C9J202 215 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 NDUFB5O43674 189 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 TYROBPO43914 113 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 ALOX5P09917 674 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 TBXA2RP21731 343 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 CPOXP36551 454 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 HPCAL1P37235 193 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 KIR2DL2P43627 348 aaPredicted RBP18.42■□□□□ 0.54
SHMT1-209ENST00000582653 SIRPAP78324 504 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 MLC1Q15049 377 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 POU4F3Q15319 338 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 TMEM44Q2T9K0 475 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 ATP6AP1LQ52LC2 224 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 IL23RQ5VWK5 629 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 LRIG3Q6UXM1 1119 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 BTLAQ7Z6A9 289 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 KRTCAP2Q8N6L1 136 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 OR6Y1Q8NGX8 325 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 FNDC9Q8TBE3 224 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 JADE3Q92613 823 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 CAVIN3Q969G5 261 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 PGM2Q96G03 612 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 POM121Q96HA1 1249 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 KLHDC3Q9BQ90 382 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 ZCCHC3Q9NUD5 404 aaKnown RBP18.42■□□□□ 0.54
SHMT1-209ENST00000582653 SNX8Q9Y5X2 465 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 ABCA4P78363 2273 aa18.42■□□□□ 0.54
SHMT1-209ENST00000582653 HMGN2P05204 90 aaKnown RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 CD53P19397 219 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 MAPK1P28482 360 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 HOXC12P31275 282 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 SERPINB5P36952 375 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ETV4P43268 484 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 PON3Q15166 354 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 EXOSC6Q5RKV6 272 aaKnown RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 WDR93Q6P2C0 686 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ZNF474Q6S9Z5 364 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 HOMEZQ8IX15 550 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 COX18Q8N8Q8 333 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 FNDC5Q8NAU1 212 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 CDS1Q92903 461 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ZBTB9Q96C00 473 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 CHMP6Q96FZ7 201 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 PKNOX2Q96KN3 472 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 WFIKKN1Q96NZ8 548 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 OPN3Q9H1Y3 402 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ZNF395Q9H8N7 513 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 RNF122Q9H9V4 155 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 NEUROD4Q9HD90 331 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ELOVL5Q9NYP7 299 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 EIF3LQ9Y262 564 aaKnown RBP18.41■□□□□ 0.54
SHMT1-209ENST00000582653 ZNF175Q9Y473 711 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 AP4B1Q9Y6B7 739 aa18.41■□□□□ 0.54
SHMT1-209ENST00000582653 WDR91A4D1P6 747 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 ITM2AO43736 263 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 LYPLA1O75608 230 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-209ENST00000582653 CGAP01215 116 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 OPN1LWP04000 364 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 CD79BP40259 229 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 PRIM2P49643 509 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 LASP1Q14847 261 aaKnown RBP18.4■□□□□ 0.54
SHMT1-209ENST00000582653 CPTPQ5TA50 214 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 ZCCHC12Q6PEW1 402 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 GGNQ86UU5 652 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 NUDCD3Q8IVD9 361 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 TUBGCP3Q96CW5 907 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms