RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PLAURQ03405 335 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ILKQ13418 452 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 TRAM2Q15035 370 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 EBPQ15125 230 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 CSRP2Q16527 193 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 DECR1Q16698 335 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ENTPD8Q5MY95 495 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 CDCP2Q5VXM1 449 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 HLA-DQA1Q5Y7H0 255 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 AP1ARQ63HQ0 302 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ZNF770Q6IQ21 691 aaPredicted RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 FAM199XQ6PEV8 388 aaPredicted RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 FAM198BQ6UWH4 519 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 SLC29A4Q7RTT9 530 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 C9orf40Q8IXQ3 194 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 PRR22Q8IZ63 422 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 GALNT6Q8NCL4 622 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 METTL21AQ8WXB1 218 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 NR4A3Q92570 626 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 CNOT9Q92600 299 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 DIO2Q92813 273 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 GTPBP3Q969Y2 492 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 ADIPOR1Q96A54 375 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 EFHD2Q96C19 240 aaPredicted RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 LRFN5Q96NI6 719 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 CMKLR1Q99788 373 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 NIPSNAP1Q9BPW8 284 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 GABARAPL3Q9BY60 117 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ULBP3Q9BZM4 244 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 NRSN2Q9GZP1 204 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 WWTR1Q9GZV5 400 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ZNF696Q9H7X3 374 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 PAPOLBQ9NRJ5 636 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 FAM86C1Q9NVL1 165 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 FLRT3Q9NZU0 649 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 EML6Q6ZMW3 1958 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 CPAMD8Q8IZJ3 1885 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 C2orf92A0A1B0GVN3 265 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 A0A1W2PRQ8 180 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 SH3PXD2BA1X283 911 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 PMS2P1A4D2B8 440 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 OR6C76A6NM76 312 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 C9J4A7 227 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 H3BNH8 94 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 OR10H3O60404 316 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 CYP7B1O75881 506 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 OR5F1O95221 314 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 OXSR1O95747 527 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 IL33O95760 270 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 MT-CO3P00414 261 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 GASTP01350 101 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 KLK3P07288 261 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 SMIM18P0DKX4 95 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 PRG2P13727 222 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 DRD5P21918 477 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 EPHA2P29317 976 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 GPR143P51810 404 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 NR0B1P51843 470 aaKnown RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 UGT2B15P54855 530 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 NPRL3Q12980 569 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 IL18R1Q13478 541 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 DGCR6Q14129 220 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 FGFBP1Q14512 234 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 ZNF141Q15928 474 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.7□□□□□ -0.86
SS18-217ENST00000580958 ISXQ2M1V0 245 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 ZNF691Q5VV52 312 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 PGBD2Q6P3X8 592 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 TTC33Q6PID6 262 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 PAPD4Q6PIY7 484 aaKnown RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 TMEM205Q6UW68 189 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 Q6ZPB1 254 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 GDF7Q7Z4P5 450 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 CPEB2Q7Z5Q1 589 aaKnown RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 THAP5Q7Z6K1 395 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 RANBP3LQ86VV4 465 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 C8orf59Q8N0T1 100 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 ZNF786Q8N393 782 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 NFAM1Q8NET5 270 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 SLC7A13Q8TCU3 470 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 WDR77Q9BQA1 342 aaPredicted RBP9.7□□□□□ -0.86
SS18-217ENST00000580958 GRIP2Q9C0E4 1043 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 ARMC7Q9H6L4 198 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 ZNF556Q9HAH1 456 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 PISDQ9UG56 409 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 MGAT4BQ9UQ53 548 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 MYRFQ9Y2G1 1151 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 GMPPBQ9Y5P6 360 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 B3GALT1Q9Y5Z6 326 aa9.7□□□□□ -0.86
SS18-217ENST00000580958 CDC14CA4D256 554 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 E9PQ18 207 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 LRP3O75074 770 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 NTN1O95631 604 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 ADAP00813 363 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 THY1P04216 161 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 POU2F1P14859 743 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 HTR2AP28223 471 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 IFNA8P32881 189 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 RAB15P59190 212 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 CD47Q08722 323 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms