RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LARS2Q15031 903 aaKnown RBP23.06■■□□□ 1.28
SHMT1-207ENST00000580002 ATP6AP1Q15904 470 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 NRF1Q16656 503 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 KLHL26Q53HC5 615 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 DCAF10Q5QP82 559 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 ARHGDIGQ99819 225 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 MAGED1Q9Y5V3 778 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-207ENST00000580002 FFAR1O14842 300 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 PPM1BO75688 479 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 SERPINA7P05543 415 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 THBS1P07996 1170 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 SOX3P41225 446 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 NRG3P56975 720 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 LIN52Q52LA3 116 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 DEF8Q6ZN54 512 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 ICA1LQ8NDH6 482 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 RASSF5Q8WWW0 418 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 FAM122AQ96E09 287 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 THOC3Q96J01 351 aaKnown RBP23.06■■□□□ 1.28
SHMT1-207ENST00000580002 CFAP47Q6ZTR5 3102 aa23.06■■□□□ 1.28
SHMT1-207ENST00000580002 OR6B1O95007 311 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 PEX2P28328 305 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 KRT20P35900 424 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 PNLIPRP2P54317 469 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 GANABQ14697 944 aaKnown RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 LAPTM4AQ15012 233 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 ZNF468Q5VIY5 522 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 BICRALQ6AI39 1079 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 PIWIL3Q7Z3Z3 882 aaKnown RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 MARCH3Q86UD3 253 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 RPS19BP1Q86WX3 136 aaKnown RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 TAGAPQ8N103 731 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 ZNF300Q96RE9 604 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 BARD1Q99728 777 aaKnown RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 UBQLN4Q9NRR5 601 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 C6orf203Q9P0P8 240 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-207ENST00000580002 MSRB2Q9Y3D2 182 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 U3KQV3 271 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 DOCK10Q96BY6 2186 aa23.05■■□□□ 1.28
SHMT1-207ENST00000580002 CDHR4A6H8M9 788 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 C2orf72A6NCS6 295 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 SAC3D1A6NKF1 404 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 LDLRP01130 860 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 PTDSS1P48651 473 aaKnown RBP23.04■■□□□ 1.28
SHMT1-207ENST00000580002 MLF1P58340 268 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 FGFBP1Q14512 234 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 TRIP10Q15642 601 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 HS3ST5Q8IZT8 346 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 HGDQ93099 445 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 VPS50Q96JG6 964 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 MRTO4Q9UKD2 239 aaKnown RBP23.04■■□□□ 1.28
SHMT1-207ENST00000580002 TESMINQ9Y4I5 508 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 DTNAQ9Y4J8 743 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 ENPP4Q9Y6X5 453 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 LOC400499M0QZD8 3231 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 SERINC4A6NH21 518 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 ADAM10O14672 748 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 IFNW1P05000 195 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 ICAM2P13598 275 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 ZNF136P52737 540 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 KCNC4Q03721 635 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 ANKRD34AQ69YU3 496 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 KBTBD2Q8IY47 623 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 PMM1Q92871 262 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 FGF11Q92914 225 aa23.04■■□□□ 1.28
SHMT1-207ENST00000580002 DNAJB12Q9NXW2 375 aaKnown RBP23.04■■□□□ 1.28
SHMT1-207ENST00000580002 OR6C70A6NIJ9 312 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 ARGFXA6NJG6 315 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 PDLIM1O00151 329 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 SYT5O00445 386 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 FADS1O60427 444 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 NTN1O95631 604 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 UBTFL6P0CB48 400 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-207ENST00000580002 TBXA2RP21731 343 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 PSMD4P55036 377 aaKnown RBP23.03■■□□□ 1.28
SHMT1-207ENST00000580002 PIN1Q13526 163 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-207ENST00000580002 RAPSNQ13702 412 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 FNDC7Q5VTL7 733 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 H3F3CQ6NXT2 135 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 TBPL2Q6SJ96 375 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 IL20RBQ6UXL0 311 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 EPHX4Q8IUS5 362 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 OR10G3Q8NGC4 313 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 GRHL3Q8TE85 626 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 CENPNQ96H22 339 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-207ENST00000580002 ANKRD10Q9NXR5 420 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 DNAJB9Q9UBS3 223 aa23.03■■□□□ 1.28
SHMT1-207ENST00000580002 CYP7B1O75881 506 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 ID4P47928 161 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 RNF220Q5VTB9 566 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 OR2T5Q6IEZ7 315 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 POGLUT1Q8NBL1 392 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 OR2T29Q8NH02 315 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 OR52J3Q8NH60 311 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 ZNF524Q96C55 264 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 CIB1Q99828 191 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 CACYBPQ9HB71 228 aaKnown RBP23.02■■□□□ 1.28
SHMT1-207ENST00000580002 ST6GALNAC1Q9NSC7 600 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-207ENST00000580002 HRH3Q9Y5N1 445 aa23.02■■□□□ 1.28
SHMT1-207ENST00000580002 APC2O95996 2303 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms