RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 IL12BP29460 328 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 EMDP50402 254 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 UBASH3AP57075 661 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 CARD18P57730 90 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 STX5Q13190 355 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 TAF9Q16594 264 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 PRICKLE4Q2TBC4 344 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 TCHHL1Q5QJ38 904 aaPredicted RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 NKAPQ8N5F7 415 aaKnown RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 FAM110DQ8TAY7 271 aaPredicted RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 RGMAQ96B86 450 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 CMTM7Q96FZ5 175 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 C1QTNF6Q9BXI9 259 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 RTN4RQ9BZR6 473 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 BRINP2Q9C0B6 783 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 BCO1Q9HAY6 547 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 IARS2Q9NSE4 1012 aaKnown RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 C20orf96Q9NUD7 363 aaPredicted RBP14.06□□□□□ -0.16
VPS53-218ENST00000575207 TREM2Q9NZC2 230 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 PRODH2Q9UF12 536 aa14.06□□□□□ -0.16
VPS53-218ENST00000575207 ZCWPW2A0A1B0GU75 182 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 A0A1W2PR80 420 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 AKR1B15C9JRZ8 316 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 PLPP1O14494 284 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 PGRMC2O15173 223 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 TMPRSS11DO60235 418 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 FADS1O60427 444 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 CBX7O95931 251 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 SAGP10523 405 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 ANPEPP15144 967 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 XKP51811 444 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 ARFIP1P53367 373 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 KRTAP10-3P60369 221 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 LAPTM5Q13571 262 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 ZNF362Q5T0B9 420 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 SPATA19Q7Z5L4 167 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 GTPBP8Q8N3Z3 284 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 UHMK1Q8TAS1 419 aaKnown RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.05□□□□□ -0.16
VPS53-218ENST00000575207 CPNE4Q96A23 557 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 PDLIM5Q96HC4 596 aaKnown RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 NAP1L3Q99457 506 aaPredicted RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 GPA33Q99795 319 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 CENPKQ9BS16 269 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 SAYSD1Q9NPB0 183 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 MAT2BQ9NZL9 334 aa14.05□□□□□ -0.16
VPS53-218ENST00000575207 TESQ9UGI8 421 aaKnown RBP14.05□□□□□ -0.16
VPS53-218ENST00000575207 LYNX1G3V0Z9 82 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 WNT9BO14905 357 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 IL33O95760 270 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 CT45A8P0DMV1 189 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 CT45A9P0DMV2 189 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 LYNX1P0DP58 116 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 CPMP14384 443 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 PSMA4P25789 261 aaKnown RBP14.04□□□□□ -0.16
VPS53-218ENST00000575207 PGGT1BP53609 377 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 PSPHP78330 225 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 MRPS22P82650 360 aaKnown RBP14.04□□□□□ -0.16
VPS53-218ENST00000575207 MYBPC1Q00872 1141 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 POU4F1Q01851 419 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 SLC9A3R2Q15599 337 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 ADIPOQQ15848 244 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 CT45A2Q5DJT8 189 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 OLFML2AQ68BL7 652 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 OR4K14Q8NGD5 310 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 DUSP19Q8WTR2 217 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 MUS81Q96NY9 551 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 FAM167BQ9BTA0 163 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 ZNF717Q9BY31 904 aaPredicted RBP14.04□□□□□ -0.16
VPS53-218ENST00000575207 NARFLQ9H6Q4 476 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 CA10Q9NS85 328 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 OPN4Q9UHM6 478 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 MCM8Q9UJA3 840 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 TFR2Q9UP52 801 aa14.04□□□□□ -0.16
VPS53-218ENST00000575207 IGLV3-32A0A0A0MS00 114 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 A0A0A6YYD5 115 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 NDUFB5O43674 189 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 OR4A8P0C604 315 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 FAM58BPP0C7Q3 252 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 PCNAP12004 261 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 GGT5P36269 586 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 MAGEA1P43355 309 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 CDK16Q00536 496 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 HLXQ14774 488 aaPredicted RBP14.03□□□□□ -0.16
VPS53-218ENST00000575207 HSP90AA5PQ58FG0 334 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 CYP20A1Q6UW02 462 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 FCRLAQ7L513 359 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 CARM1Q86X55 608 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 RELL1Q8IUW5 271 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 ZCCHC24Q8N2G6 241 aaKnown RBP14.03□□□□□ -0.16
VPS53-218ENST00000575207 OR52R1Q8NGF1 315 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 SRXN1Q9BYN0 137 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 PLAC1Q9HBJ0 212 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 ABCG2Q9UNQ0 655 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 OARD1Q9Y530 152 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 PLXNB1O43157 2135 aa14.03□□□□□ -0.16
VPS53-218ENST00000575207 CIB4A0PJX0 185 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 MAGEB16A2A368 324 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 NPEPPSL1A6NEC2 478 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 SDR42E2A6NKP2 422 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms