RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 STX11O75558 287 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 SOX30O94993 753 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 IGHG3P01860 377 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 TCEA1P23193 301 aaKnown RBP17.79■□□□□ 0.44
CLN3-225ENST00000566824 LCN1P31025 176 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 ATP12AP54707 1039 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 DSTNP60981 165 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 NFYCQ13952 458 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 GPAT3Q53EU6 434 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 WIPI1Q5MNZ9 446 aaPredicted RBP17.79■□□□□ 0.44
CLN3-225ENST00000566824 PDZK1Q5T2W1 519 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 ATAD3BQ5T9A4 648 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 BNC2Q6ZN30 1099 aaPredicted RBP17.79■□□□□ 0.44
CLN3-225ENST00000566824 TRILQ7L0X0 811 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 YRDCQ86U90 279 aaKnown RBP17.79■□□□□ 0.44
CLN3-225ENST00000566824 GHDCQ8N2G8 530 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 MAL2Q969L2 176 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 ARSGQ96EG1 525 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 CGREF1Q99674 301 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 SLC39A3Q9BRY0 314 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 SAP130Q9H0E3 1048 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 SLC38A1Q9H2H9 487 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 SPRR3Q9UBC9 169 aa17.79■□□□□ 0.44
CLN3-225ENST00000566824 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.79■□□□□ 0.44
CLN3-225ENST00000566824 FXYD1O00168 92 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 KIAA0513O60268 411 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 CCDC22O60826 627 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 BCAS1O75363 584 aaPredicted RBP17.78■□□□□ 0.44
CLN3-225ENST00000566824 UGT2B17O75795 530 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 TRAPPC6AO75865 159 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 AGR2O95994 175 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 AK1P00568 194 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 HPNP05981 417 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 TFPTP0C1Z6 253 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 ELAVL4P26378 380 aaKnown RBP17.78■□□□□ 0.44
CLN3-225ENST00000566824 MTPNP58546 118 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 SRSF1Q07955 248 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-225ENST00000566824 RPS26P11Q5JNZ5 115 aaPredicted RBP17.78■□□□□ 0.44
CLN3-225ENST00000566824 FAM83FQ8NEG4 500 aaPredicted RBP17.78■□□□□ 0.44
CLN3-225ENST00000566824 PRR7Q8TB68 274 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 SLC38A5Q8WUX1 472 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 SH3YL1Q96HL8 342 aaPredicted RBP17.78■□□□□ 0.44
CLN3-225ENST00000566824 ANKRD27Q96NW4 1050 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 B4GALT7Q9UBV7 327 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 ZNF835Q9Y2P0 537 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 SLC6A5Q9Y345 797 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 WDR45Q9Y484 360 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 GMEB1Q9Y692 573 aa17.78■□□□□ 0.44
CLN3-225ENST00000566824 SCDO00767 359 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 MRASO14807 208 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 SLC22A2O15244 555 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 NDUFB5O43674 189 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ZIC3O60481 467 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 CBR3O75828 277 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 NR2F1P10589 423 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 BMP2P12643 396 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 COX4I1P13073 169 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ADSLP30566 484 aaPredicted RBP17.77■□□□□ 0.44
CLN3-225ENST00000566824 CLK3P49761 638 aaKnown RBP17.77■□□□□ 0.44
CLN3-225ENST00000566824 PLAURQ03405 335 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 CYLC2Q14093 348 aaPredicted RBP17.77■□□□□ 0.44
CLN3-225ENST00000566824 TOMM20Q15388 145 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ZNF141Q15928 474 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 AP1ARQ63HQ0 302 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ZNF614Q8N883 585 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 OR4K17Q8NGC6 315 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ZNF524Q96C55 264 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 RCN3Q96D15 328 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 TRNT1Q96Q11 434 aaKnown RBP17.77■□□□□ 0.44
CLN3-225ENST00000566824 NPAS1Q99742 590 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 ACKR4Q9NPB9 350 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 QPCTLQ9NXS2 382 aa17.77■□□□□ 0.44
CLN3-225ENST00000566824 MYO7BQ6PIF6 2116 aa17.77■□□□□ 0.43
CLN3-225ENST00000566824 IGLV3-32A0A0A0MS00 114 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 TRGV5A0A0B4J1U4 118 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 A0A1B0GVC2 190 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 A0A1W2PQD3 144 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 CLDN24A6NM45 220 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 BCHEP06276 602 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 GPX2P18283 190 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 ZNF117Q03924 483 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 C17orf67Q0P5P2 114 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 ELOAQ14241 798 aaKnown RBP17.76■□□□□ 0.43
CLN3-225ENST00000566824 ADRM1Q16186 407 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 C3AR1Q16581 482 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 TRMT5Q32P41 509 aaKnown RBP17.76■□□□□ 0.43
CLN3-225ENST00000566824 DCST1Q5T197 706 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 C1QL3Q5VWW1 255 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 CBLN3Q6UW01 205 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 LRRC74BQ6ZQY2 392 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 LSRQ86X29 649 aaPredicted RBP17.76■□□□□ 0.43
CLN3-225ENST00000566824 ZNF619Q8N2I2 560 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 PHOSPHO1Q8TCT1 267 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 TMEM19Q96HH6 336 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 RSPO3Q9BXY4 272 aaPredicted RBP17.76■□□□□ 0.43
CLN3-225ENST00000566824 OR2B2Q9GZK3 357 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 HOXD1Q9GZZ0 328 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 SDHAF3Q9NRP4 125 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 LIPT1Q9Y234 373 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 ARL2BPQ9Y2Y0 163 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms