RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IL11P20809 199 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 FPR1P21462 350 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 PSMA4P25789 261 aaKnown RBP15.36■□□□□ 0.05
CLN3-216ENST00000565316 LCN1P31025 176 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 SLC6A8P48029 635 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 SLC18A2Q05940 514 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 LTBQ06643 244 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 ZNF550Q7Z398 422 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 NUP43Q8NFH3 380 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 OR6Y1Q8NGX8 325 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 ZFP28Q8NHY6 868 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 ACTRT2Q8TDY3 377 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 PPCDCQ96CD2 204 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 TRMOQ9BU70 441 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 IQCGQ9H095 443 aaKnown RBP15.36■□□□□ 0.05
CLN3-216ENST00000565316 TUBB1Q9H4B7 451 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 DNHD1Q96M86 4753 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 ROS1P08922 2347 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 TLN2Q9Y4G6 2542 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 COPEO14579 308 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 AKAP10O43572 662 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 NDUFB5O43674 189 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 KCNK2O95069 426 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 ACP2P11117 423 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 GPC1P35052 558 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 KCNJ5P48544 419 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 MANFP55145 182 aaKnown RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 SGCBQ16585 318 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 CTU2Q2VPK5 515 aaKnown RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 RFTN2Q52LD8 501 aaPredicted RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 Q5PR19 223 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 CPTPQ5TA50 214 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 KANK2Q63ZY3 851 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 MFSD12Q6NUT3 480 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 ZCCHC12Q6PEW1 402 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 PRSS57Q6UWY2 283 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 C20orf204Q6ZNR8 217 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 ZAR1Q86SH2 424 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 WDR75Q8IWA0 830 aaKnown RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 GSPT2Q8IYD1 628 aaKnown RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 SLC16A11Q8NCK7 471 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 OR6K3Q8NGY3 331 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 OR10D3Q8NH80 312 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 ZBTB8AQ96BR9 441 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 GMPPAQ96IJ6 420 aaPredicted RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 MS4A4EQ96PG1 132 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 TSSK3Q96PN8 268 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 HS3ST6Q96QI5 342 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 GATA5Q9BWX5 397 aaPredicted RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 PAQR5Q9NXK6 330 aaPredicted RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 VDAC3Q9Y277 283 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 TMED5Q9Y3A6 229 aa15.35■□□□□ 0.05
CLN3-216ENST00000565316 FN1P02751 2386 aaKnown RBP15.35■□□□□ 0.05
CLN3-216ENST00000565316 JMJD1CQ15652 2540 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 A0A1W2PRB8 838 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 EIF1AYO14602 144 aaKnown RBP15.34■□□□□ 0.05
CLN3-216ENST00000565316 LSM1O15116 133 aaKnown RBP15.34■□□□□ 0.05
CLN3-216ENST00000565316 GMFGO60234 142 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 SS18L1O75177 396 aaPredicted RBP15.34■□□□□ 0.05
CLN3-216ENST00000565316 THBDP07204 575 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 KRT4P19013 534 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 ADSLP30566 484 aaPredicted RBP15.34■□□□□ 0.05
CLN3-216ENST00000565316 EIF1AXP47813 144 aaKnown RBP15.34■□□□□ 0.05
CLN3-216ENST00000565316 PRKAG1P54619 331 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 RAC1P63000 192 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 DUSP5Q16690 384 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 PLPPR5Q32ZL2 321 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 GALNT10Q86SR1 603 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 C10orf107Q8IVU9 208 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 HOMEZQ8IX15 550 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 CCDC63Q8NA47 563 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 SLC9A6Q92581 669 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 MTERF3Q96E29 417 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 ARSGQ96EG1 525 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 C16orf58Q96GQ5 468 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 COX4I2Q96KJ9 171 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 NPAS1Q99742 590 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 UBTD1Q9HAC8 227 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 UBQLN4Q9NRR5 601 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 MED17Q9NVC6 651 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 SH3BP4Q9P0V3 963 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 BAIAP2L1Q9UHR4 511 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 EMC9Q9Y3B6 208 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 DNAJC15Q9Y5T4 150 aa15.34■□□□□ 0.05
CLN3-216ENST00000565316 A0A1W2PQD3 144 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 KLF4O43474 513 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 TRIM13O60858 407 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 FGF4P08620 206 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 LINC00032P0C843 101 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 BCKDHAP12694 445 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 PPP3CBP16298 524 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 ASMTP46597 345 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 SERPINB4P48594 390 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 RPL38P63173 70 aaKnown RBP15.33■□□□□ 0.04
CLN3-216ENST00000565316 PCLAFQ15004 111 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 MLC1Q15049 377 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 UGT3A2Q3SY77 523 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 FIGNL1Q6PIW4 674 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 CLEC9AQ6UXN8 241 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 P3H2Q8IVL5 708 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms