RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TUBGCP3Q96CW5 907 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 STARD4Q96DR4 205 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 OTUB1Q96FW1 271 aaPredicted RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 ADGRG7Q96K78 797 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 PIGQQ9BRB3 760 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 GPATCH1Q9BRR8 931 aaKnown RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 TBL1XR1Q9BZK7 514 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 LIME1Q9H400 295 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 PTGES2Q9H7Z7 377 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 AKTIPQ9H8T0 292 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 ZCCHC3Q9NUD5 404 aaKnown RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 DNAJB12Q9NXW2 375 aaKnown RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 ITGB1BP2Q9UKP3 347 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 ACTL7BQ9Y614 415 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 KCNE3Q9Y6H6 103 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 F8P00451 2351 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 A0A1W2PQD3 144 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 C7orf72A4D263 438 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 SHISA8B8ZZ34 492 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 NPIPB9F8W1W9 429 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 TM9SF1O15321 606 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 RGS16O15492 202 aaPredicted RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 SCN2BO60939 215 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 C6orf47O95873 294 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CGAP01215 116 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CRHP06850 196 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 ALOX5P09917 674 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 EPXP11678 715 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 KIR2DL2P43627 348 aaPredicted RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 CCT3P49368 545 aaKnown RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 PCYT1AP49585 367 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 PRIM2P49643 509 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CLK3P49761 638 aaKnown RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 ABCE1P61221 599 aaKnown RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 EEF1A1P68104 462 aaKnown RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 HBA1P69905 142 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CD226Q15762 336 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CTU2Q2VPK5 515 aaKnown RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 EEF1A1P5Q5VTE0 462 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 RAET1LQ5VY80 246 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 CDC73Q6P1J9 531 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 TMEM200AQ86VY9 491 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 METTL25Q8N6Q8 603 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 LINC01560Q8TB33 94 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 POC1BQ8TC44 478 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 ACTRT2Q8TDY3 377 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 PGM2Q96G03 612 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 ZNF845Q96IR2 970 aaPredicted RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 BTBD2Q9BX70 525 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 BHLHE41Q9C0J9 482 aaPredicted RBP13.39□□□□□ -0.27
CLN3-213ENST00000565047 PIGMQ9H3S5 423 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 RNF122Q9H9V4 155 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 UBQLN4Q9NRR5 601 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 GALNT8Q9NY28 637 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 RAP2CQ9Y3L5 183 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 AP4B1Q9Y6B7 739 aa13.39□□□□□ -0.27
CLN3-213ENST00000565047 WDR91A4D1P6 747 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 EEF1E1-BLOC1S5C9J1V9 151 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 ANKRD28O15084 1053 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 EEF1E1O43324 174 aaKnown RBP13.38□□□□□ -0.27
CLN3-213ENST00000565047 NDUFB5O43674 189 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 NID1P14543 1247 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 ZNF17P17021 662 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 DDX5P17844 614 aaKnown RBP13.38□□□□□ -0.27
CLN3-213ENST00000565047 PHC1P78364 1004 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 PLPPR5Q32ZL2 321 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 KLHL26Q53HC5 615 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLN3-213ENST00000565047 LUZP2Q86TE4 346 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 KIF18BQ86Y91 864 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 GRAMD2AQ8IUY3 354 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 UBQLNLQ8IYU4 475 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 GTPBP8Q8N3Z3 284 aaPredicted RBP13.38□□□□□ -0.27
CLN3-213ENST00000565047 CDS1Q92903 461 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 ZNF524Q96C55 264 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 LRRC46Q96FV0 321 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 RBM24Q9BX46 236 aaKnown RBP13.38□□□□□ -0.27
CLN3-213ENST00000565047 ACTRT3Q9BYD9 372 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 CXXC4Q9H2H0 198 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 ACBD3Q9H3P7 528 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 SERHL2Q9H4I8 314 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 ATAD3AQ9NVI7 634 aa13.38□□□□□ -0.27
CLN3-213ENST00000565047 A0A087WZY1 265 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 TUBAL3A6NHL2 446 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 SLC22A20A6NK97 555 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 H3BML4 177 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 MSTNO14793 375 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 AQP8O94778 261 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 SNUPNO95149 360 aaKnown RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 HSPA4LO95757 839 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 LINGO3P0C6S8 592 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 SLC1A6P48664 564 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 IST1P53990 364 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 EEFSECP57772 596 aaKnown RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 POU6F2P78424 691 aaPredicted RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 PDCD2Q16342 344 aaPredicted RBP13.37□□□□□ -0.27
CLN3-213ENST00000565047 AP1ARQ63HQ0 302 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 VWA1Q6PCB0 445 aa13.37□□□□□ -0.27
CLN3-213ENST00000565047 ZNF474Q6S9Z5 364 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms