RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ALG1L2C9J202 215 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 NPIPA7E9PJI5 369 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 H3BML4 177 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 SCDO00767 359 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 CPSF4O95639 269 aaKnown RBP14.16□□□□□ -0.14
VPS39-203ENST00000561797 NPIPA8P0DM63 369 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 KITP10721 976 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 PEPDP12955 493 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 ASCL1P50553 236 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 NME5P56597 212 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 MYBPHQ13203 477 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 ARSKQ6UWY0 536 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 CAMKMTQ7Z624 323 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 ADGRE4PQ86SQ3 457 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 GRAMD2AQ8IUY3 354 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 CLEC4FQ8N1N0 589 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 OR4A15Q8NGL6 344 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 SMPDL3BQ92485 455 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 MOAP1Q96BY2 351 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 TLCD1Q96CP7 247 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 SH3YL1Q96HL8 342 aaPredicted RBP14.16□□□□□ -0.14
VPS39-203ENST00000561797 OR7D2Q96RA2 312 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 TM9SF2Q99805 663 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 ZNF559Q9BR84 538 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 NEUROD4Q9HD90 331 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 THAP1Q9NVV9 213 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 GPATCH2Q9NW75 528 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 MARCOQ9UEW3 520 aaPredicted RBP14.16□□□□□ -0.14
VPS39-203ENST00000561797 PCDHGB4Q9UN71 923 aa14.16□□□□□ -0.14
VPS39-203ENST00000561797 IGLV3-32A0A0A0MS00 114 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 GOLGA8QA0A0J9YX86 632 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 GOLGA8OA6NCC3 632 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 GOLGA8NF8WBI6 632 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 SDHDO14521 159 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 SEC14L5O43304 696 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 NGFRP08138 427 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 KRT16P08779 473 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 ATP6V1C1P21283 382 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 OPRM1P35372 400 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 RNF144AP50876 292 aaPredicted RBP14.15□□□□□ -0.14
VPS39-203ENST00000561797 RPS26P62854 115 aaKnown RBP14.15□□□□□ -0.14
VPS39-203ENST00000561797 FOXF2Q12947 444 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 CASP8Q14790 479 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 BCL2A1Q16548 175 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 DCST2Q5T1A1 773 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 ATG16L1Q676U5 607 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 P4HA3Q7Z4N8 544 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 ANKRD46Q86W74 232 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 LURAP1LQ8IV03 231 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 GCNT2Q8N0V5 402 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 MEIOBQ8N635 442 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 OR5D16Q8NGK9 328 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 WNT2BQ93097 391 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 INTS12Q96CB8 462 aaKnown RBP14.15□□□□□ -0.14
VPS39-203ENST00000561797 LRRC46Q96FV0 321 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 PIGQQ9BRB3 760 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 WDR55Q9H6Y2 383 aaPredicted RBP14.15□□□□□ -0.14
VPS39-203ENST00000561797 MANSC1Q9H8J5 431 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 MCCC2Q9HCC0 563 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 CLCF1Q9UBD9 225 aa14.15□□□□□ -0.14
VPS39-203ENST00000561797 CREBBPQ92793 2442 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 EEF1E1-BLOC1S5C9J1V9 151 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 H0YC42 278 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 SYT5O00445 386 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 RNASET2O00584 256 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 ANKRD28O15084 1053 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 EEF1E1O43324 174 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 SNNO75324 88 aaPredicted RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 RCBTB2O95199 551 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 TGM6O95932 706 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 ALDOCP09972 364 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 MATN1P21941 496 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 LCN1P31025 176 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 SUCLG1P53597 346 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 SLC18A1P54219 525 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 CASP9P55211 416 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 TPD52P55327 224 aaPredicted RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 PHC1P78364 1004 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 GLYR1Q49A26 553 aaPredicted RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 BHLHB9Q6PI77 547 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 C6orf120Q7Z4R8 191 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 WDR75Q8IWA0 830 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 OR8J2Q8NGG1 315 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 GOT1L1Q8NHS2 421 aaPredicted RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 PHOSPHO1Q8TCT1 267 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 RNASE6Q93091 150 aaKnown RBP14.14□□□□□ -0.15
VPS39-203ENST00000561797 SLC35G5Q96KT7 338 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 UCN2Q96RP3 112 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 SH3GL2Q99962 352 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 KCNN3Q9UGI6 736 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 L3MBTL1Q9Y468 752 aa14.14□□□□□ -0.15
VPS39-203ENST00000561797 DCHS2Q6V1P9 2916 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 RNF103-CHMP3A0A140T963 221 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 A0A1W2PQD3 144 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 TRPC5OSA6NMA1 111 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 LINC01387J3KSC0 135 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 HDAC3O15379 428 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 HCRTR2O43614 444 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 IL18BPO95998 194 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 EPHA3P29320 983 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms