RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 UBL4AP11441 157 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 UQCRBP14927 111 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 ETS2P15036 469 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 IL7RP16871 459 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 GDF1P27539 372 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 PCGF2P35227 344 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 CPA2P48052 419 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 SLC7A2P52569 658 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 PSME3P61289 254 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 PPIAP62937 165 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 PMP22Q01453 160 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 CHRNEQ04844 493 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 C19orf57Q0VDD7 668 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 FUT5Q11128 374 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 GANABQ14697 944 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 LARS2Q15031 903 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 ZNF141Q15928 474 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 SYPL1Q16563 259 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 RABL3Q5HYI8 236 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 BICRALQ6AI39 1079 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 EIF3MQ7L2H7 374 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 PRICKLE2Q7Z3G6 844 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 NET1Q7Z628 596 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 PLCZ1Q86YW0 608 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 CMIPQ8IY22 773 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 PGAM4Q8N0Y7 254 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 CISD2Q8N5K1 135 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 BHLHE22Q8NFJ8 381 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 TOR1AIP2Q8NFQ8 470 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 OR2T12Q8NG77 320 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 OR10A6Q8NH74 314 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 NFKBIDQ8NI38 313 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 PHOSPHO1Q8TCT1 267 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 WDR60Q8WVS4 1066 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 FAR1Q8WVX9 515 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 NR4A3Q92570 626 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 REXO5Q96IC2 774 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 NSL1Q96IY1 281 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 ZNF607Q96SK3 696 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 TREX2Q9BQ50 279 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 GPATCH1Q9BRR8 931 aaKnown RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 ZNF703Q9H7S9 590 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 MTHFD2LQ9H903 347 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 GALNT9Q9HCQ5 603 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 ARL8BQ9NVJ2 186 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 FBXO34Q9NWN3 711 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 DKKL1Q9UK85 242 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 C15orf41Q9Y2V0 281 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 IFT52Q9Y366 437 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 DSPPQ9NZW4 1301 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 SMG1Q96Q15 3661 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 NPIPA5A0A0B4J1W7 369 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 PRORSD1PA6NEY8 169 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SERINC4A6NH21 518 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 AGAP5A6NIR3 686 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 LRRC3CA6NJW4 275 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 FAM166BA8MTA8 275 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 NPIPA7E9PJI5 369 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 GTPBP1O00178 669 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 SUV39H1O43463 412 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 HCRTR2O43614 444 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 EIF4E2O60573 245 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 FCMRO60667 390 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 UGT2B17O75795 530 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 CBX6O95503 412 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 CSTAP01040 98 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 C1QCP02747 245 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 THBS1P07996 1170 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 NUDT7P0C024 238 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 NPIPA8P0DM63 369 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 EDN3P14138 238 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SRD5A2P31213 254 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 PTGDSP41222 190 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SUMO3P55854 103 aaPredicted RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 EEFSECP57772 596 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 FOXO1Q12778 655 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ELOAQ14241 798 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 SELPLGQ14242 412 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 TOMM20Q15388 145 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 VMACQ2NL98 169 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 EIPR1Q53HC9 387 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 KRTCAP3Q53RY4 240 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 PDZK1Q5T2W1 519 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 AP1ARQ63HQ0 302 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 DESI1Q6ICB0 168 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ZAR1Q86SH2 424 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 PATL1Q86TB9 770 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 MARCH3Q86UD3 253 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ATCAYQ86WG3 371 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ZZZ3Q8IYH5 903 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ZNF843Q8N446 348 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 TMCO5AQ8N6Q1 288 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 OR4C3Q8NH37 302 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 B4GALNT2Q8NHY0 566 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 RASSF5Q8WWW0 418 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 MAL2Q969L2 176 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SNRNP40Q96DI7 357 aaKnown RBP9.2□□□□□ -0.94
USP3-216ENST00000559873 TAAR6Q96RI8 345 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SLC38A1Q9H2H9 487 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms