RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CCDC88CQ9P219 2028 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 FRG2CA6NGY1 282 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 VSTM2BA6NLU5 285 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 POLR1CO15160 346 aaPredicted RBP11.72□□□□□ -0.53
USP3-213ENST00000559711 WBP4O75554 376 aaKnown RBP11.72□□□□□ -0.53
USP3-213ENST00000559711 IFNGR2P38484 337 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 RFX3P48380 749 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 DCAF7P61962 342 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 TEKQ02763 1124 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 GDF7Q7Z4P5 450 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 CMIPQ8IY22 773 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 DEPDC4Q8N2C3 294 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 RHBDD1Q8TEB9 315 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 ACOT11Q8WXI4 607 aaPredicted RBP11.72□□□□□ -0.53
USP3-213ENST00000559711 CNOT9Q92600 299 aaKnown RBP11.72□□□□□ -0.53
USP3-213ENST00000559711 UBE2FQ969M7 185 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 NUDT9Q9BW91 350 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 TESQ9UGI8 421 aaKnown RBP11.72□□□□□ -0.53
USP3-213ENST00000559711 R4GN57 208 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 ADAMTS20P59510 1910 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 ADAMTS9Q9P2N4 1935 aa11.72□□□□□ -0.53
USP3-213ENST00000559711 TRAPPC13A5PLN9 417 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 EFCAB7A8K855 629 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 GALR2O43603 387 aaPredicted RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 BCAS1O75363 584 aaPredicted RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 IL33O95760 270 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 TP53P04637 393 aaPredicted RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 GKN3PP0CG01 181 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 GABRB1P18505 474 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 GSTM3P21266 225 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 HTR2AP28223 471 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 GPR143P51810 404 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 CSNK2BP67870 215 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 LSM11P83369 360 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP3-213ENST00000559711 FGFBP1Q14512 234 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 OR1Q1Q15612 314 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 NNATQ16517 81 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 BROXQ5VW32 411 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 LAIR1Q6GTX8 287 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 BORAQ6PGQ7 559 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 NKAIN4Q8IVV8 208 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 BPIFB6Q8NFQ5 453 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 OR1N1Q8NGS0 311 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 FAM81AQ8TBF8 368 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 APH1BQ8WW43 257 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 ATOH1Q92858 354 aaPredicted RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 LCORQ96JN0 433 aaPredicted RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 GPA33Q99795 319 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 ZNF559Q9BR84 538 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 HOXD1Q9GZZ0 328 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 NXF5Q9H1B4 397 aaKnown RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 SLC26A1Q9H2B4 701 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 DUSP21Q9H596 190 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 FBXO8Q9NRD0 319 aa11.71□□□□□ -0.53
USP3-213ENST00000559711 DNAJB12Q9NXW2 375 aaKnown RBP11.71□□□□□ -0.53
USP3-213ENST00000559711 OR6C76A6NM76 312 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 AGRPO00253 132 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 TO15178 435 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 ABCB7O75027 752 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 LYPD3O95274 346 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 HTR1AP08908 422 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 EEF1B2P24534 225 aaKnown RBP11.71□□□□□ -0.54
USP3-213ENST00000559711 FMO3P31513 532 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 ACAA2P42765 397 aaKnown RBP11.71□□□□□ -0.54
USP3-213ENST00000559711 GSSP48637 474 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 MC2RQ01718 297 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 EBPQ15125 230 aaKnown RBP11.71□□□□□ -0.54
USP3-213ENST00000559711 KLHL26Q53HC5 615 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 ZNF730Q6ZMV8 503 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 LANCL3Q6ZV70 420 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 MBOAT2Q6ZWT7 520 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 PRICKLE2Q7Z3G6 844 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 NLGN4XQ8N0W4 816 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 OR4C3Q8NH37 302 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 GNPDA2Q8TDQ7 276 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 DGCR14Q96DF8 476 aaKnown RBP11.71□□□□□ -0.54
USP3-213ENST00000559711 PRSS27Q9BQR3 290 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 RBM38Q9H0Z9 239 aaKnown RBP11.71□□□□□ -0.54
USP3-213ENST00000559711 RASSF1Q9NS23 344 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 RXFP3Q9NSD7 469 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 PLCXD1Q9NUJ7 323 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 ZNF226Q9NYT6 803 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 AASSQ9UDR5 926 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 TPRKBQ9Y3C4 175 aa11.71□□□□□ -0.54
USP3-213ENST00000559711 C2orf92A0A1B0GVN3 265 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 SERINC4A6NH21 518 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 IDSB3KWA1 339 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 MEN1O00255 615 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 XPNPEP2O43895 674 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 CPNE3O75131 537 aaKnown RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 OR6B1O95007 311 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 HEXBP07686 556 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 CYC1P08574 325 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 JUNBP17275 347 aaPredicted RBP11.7□□□□□ -0.54
USP3-213ENST00000559711 LCN1P31025 176 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 ADH7P40394 386 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 OMPP47874 163 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 NUBP1P53384 320 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 CDC42P60953 191 aa11.7□□□□□ -0.54
USP3-213ENST00000559711 SLC35A2P78381 396 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms