RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 U2AF1L4Q8WU68 220 aaKnown RBP2.35□□□□□ -2.03
SPG11-206ENST00000558093 SLC13A3Q8WWT9 602 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 THRSPQ92748 146 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 LHX4Q969G2 390 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 TMIGD2Q96BF3 282 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 RAB39BQ96DA2 213 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 VSIG2Q96IQ7 327 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 ARL5BQ96KC2 179 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 IFT74Q96LB3 600 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 SPATA13Q96N96 652 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 CPXM1Q96SM3 734 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 SDHCQ99643 169 aaPredicted RBP2.35□□□□□ -2.03
SPG11-206ENST00000558093 KIR2DL4Q99706 377 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 JPH2Q9BR39 696 aaPredicted RBP2.35□□□□□ -2.03
SPG11-206ENST00000558093 FAM213AQ9BRX8 229 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 THUMPD2Q9BTF0 503 aaKnown RBP2.35□□□□□ -2.03
SPG11-206ENST00000558093 CARD6Q9BX69 1037 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 ELOVL4Q9GZR5 314 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 VCX3BQ9H321 246 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 HAUS4Q9H6D7 363 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 C8orf33Q9H7E9 229 aaPredicted RBP2.35□□□□□ -2.03
SPG11-206ENST00000558093 PARVGQ9HBI0 331 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 MED4Q9NPJ6 270 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 FAM114A2Q9NRY5 505 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 PLSCR3Q9NRY6 295 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 PNPLA3Q9NST1 481 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 GDAP2Q9NXN4 497 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 SPASTQ9UBP0 616 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 SLC2A6Q9UGQ3 507 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 ENTPD4Q9Y227 616 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 C15orf41Q9Y2V0 281 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 GAKO14976 1311 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 MYO3BQ8WXR4 1341 aa2.35□□□□□ -2.03
SPG11-206ENST00000558093 TRAV6A0A075B6T7 132 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 A0A0J9YVX5 310 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 SERTM2A0A1B0GWG4 89 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 GSAPA4D1B5 854 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 MFSD2BA6NFX1 497 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 E9PBE3 544 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 CXCL11O14625 94 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 CHEK1O14757 476 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 MTX2O75431 263 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 TGFAP01135 160 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 KRT14P02533 472 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 ALPIP09923 528 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 TROVE2P10155 538 aaKnown RBP eCLIP2.34□□□□□ -2.03
SPG11-206ENST00000558093 ANXA8P13928 327 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 ETS1P14921 441 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 UGT1A6P19224 532 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 GLRA2P23416 452 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 PTBP1P26599 531 aaKnown RBP eCLIP2.34□□□□□ -2.03
SPG11-206ENST00000558093 CCT6AP40227 531 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 NSFP46459 744 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 BLVRAP53004 296 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 EIF3EP60228 445 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 TEFQ10587 303 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 IL24Q13007 206 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 MSLNQ13421 630 aaPredicted RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 GPM6BQ13491 265 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 CUL1Q13616 776 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 KARSQ15046 597 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 CD226Q15762 336 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 HSP90AA4PQ58FG1 418 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 ANXA8L1Q5VT79 327 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 HIST2H2AA3Q6FI13 130 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 TAS2R42Q7RTR8 314 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 ZNF677Q86XU0 584 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 SLC22A9Q8IVM8 553 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 CD302Q8IX05 232 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 GPR137CQ8N3F9 429 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 BBS5Q8N3I7 341 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 ZCCHC7Q8N3Z6 543 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 PEX13Q92968 403 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 EFHD2Q96C19 240 aaPredicted RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 MRPL38Q96DV4 380 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 FAM122AQ96E09 287 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 MTMR9Q96QG7 549 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 CCDC77Q9BR77 488 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 APOOQ9BUR5 198 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 OSBPL10Q9BXB5 764 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 SMPD3Q9NY59 655 aaPredicted RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 CYP39A1Q9NYL5 469 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 IL20Q9NYY1 176 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 APOBEC3BQ9UH17 382 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 PRELID1Q9Y255 219 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 STK38LQ9Y2H1 464 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 MRPS2Q9Y399 296 aaKnown RBP2.34□□□□□ -2.03
SPG11-206ENST00000558093 FLVCR1Q9Y5Y0 555 aa2.34□□□□□ -2.03
SPG11-206ENST00000558093 LOC100653049A0A140TA62 436 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 OR6C74A6NCV1 312 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 FAM47DPA6NHR8 397 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 RSPH10B2B2RC85 870 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 ZW10O43264 779 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 NUDT21O43809 227 aaKnown RBP2.33□□□□□ -2.04
SPG11-206ENST00000558093 CACNG3O60359 315 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 SPAG6O75602 509 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 KRT34O76011 436 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 SLC2A10O95528 541 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 KRT6AP02538 564 aa2.33□□□□□ -2.04
SPG11-206ENST00000558093 KRT6BP04259 564 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms