RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TLE4Q04727 773 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 LASP1Q14847 261 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 HHATQ5VTY9 493 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 SZRD1Q7Z422 152 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 MARCH3Q86UD3 253 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 C9orf106Q8NAJ2 232 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 PIGQQ9BRB3 760 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 THAP1Q9NVV9 213 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 MED11Q9P086 117 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 KIAA1549Q9HCM3 1950 aa14.51□□□□□ -0.09
CCDC88C-209ENST00000554872 OR2M5A3KFT3 312 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 GUSBP08236 651 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 TMIGD3P0DMS9 266 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 HK1P19367 917 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 EFNA1P20827 205 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 BMP5P22003 454 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 WNT3P56703 355 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 SORDQ00796 357 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 STX5Q13190 355 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 RAET1LQ5VY80 246 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 AP1ARQ63HQ0 302 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 ARSKQ6UWY0 536 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 MTERF4Q7Z6M4 381 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 MIPOL1Q8TD10 442 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 OIT3Q8WWZ8 545 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 HOXD1Q9GZZ0 328 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 TMBIM4Q9HC24 238 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 FAF1Q9UNN5 650 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 ZNF175Q9Y473 711 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 SNX8Q9Y5X2 465 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 AP4B1Q9Y6B7 739 aa14.5□□□□□ -0.09
CCDC88C-209ENST00000554872 NPIPB9F8W1W9 429 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 SLCO1B7G3V0H7 640 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 NDUFB5O43674 189 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 SCN2BO60939 215 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 TNFRSF21O75509 655 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 AK1P00568 194 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 LBPP18428 481 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 POU3F2P20265 443 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 RFX3P48380 749 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 STARP49675 285 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 CLNS1AP54105 237 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 ANXA8L1Q5VT79 327 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 OR2A2Q6IF42 318 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 FIGNL1Q6PIW4 674 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 ZAR1Q86SH2 424 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 LURAP1LQ8IV03 231 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 GTPBP8Q8N3Z3 284 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 MEIOBQ8N635 442 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 METTL25Q8N6Q8 603 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 ZNF527Q8NB42 609 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 CHDHQ8NE62 594 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 FBXO30Q8TB52 745 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 JADE3Q92613 823 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 CDS1Q92903 461 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 ZBTB8AQ96BR9 441 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 NUF2Q9BZD4 464 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 DPY30Q9C005 99 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 PIGMQ9H3S5 423 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 RPH3AQ9Y2J0 694 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 POLQO75417 2590 aa14.49□□□□□ -0.09
CCDC88C-209ENST00000554872 PRSS51A0A1B0GVH4 220 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 DUXAA6NLW8 204 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 TRPC5OSA6NMA1 111 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 SCDO00767 359 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 SDHDO14521 159 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 KLF11O14901 512 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 HDAC3O15379 428 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 GOSR1O95249 250 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 HPGDP15428 266 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 DGKQP52824 942 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 SUMO3P55854 103 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 CLDN15P56746 228 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 MAGOHP61326 146 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 TP53BP2Q13625 1128 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 SPDYE7PQ495Y7 208 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 KLHL26Q53HC5 615 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 DCST2Q5T1A1 773 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 ATG16L1Q676U5 607 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 SPATA19Q7Z5L4 167 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 GRAMD2AQ8IUY3 354 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 ANKRD42Q8N9B4 389 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 ADAMTS15Q8TE58 950 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 NUDT8Q8WV74 236 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 ZNF559Q9BR84 538 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 PNPOQ9NVS9 261 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 AIG1Q9NVV5 245 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 FBXO34Q9NWN3 711 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 STOML1Q9UBI4 398 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 ZNF337Q9Y3M9 751 aa14.48□□□□□ -0.09
CCDC88C-209ENST00000554872 FAM221AA4D161 298 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 CFLARO15519 480 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 ATP6V1C1P21283 382 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 PSMA4P25789 261 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 SRYQ05066 204 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 CASP8Q14790 479 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 PLPPR5Q32ZL2 321 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 CCNJQ5T5M9 372 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 OR4F3Q6IEY1 312 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 GGNQ86UU5 652 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms