RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ZNF721Q8TF20 911 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 SLCO4A1Q96BD0 722 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 TPD52L3Q96J77 140 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 COL21A1Q96P44 957 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 BTBD9Q96Q07 612 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 G6PC3Q9BUM1 346 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 CHID1Q9BWS9 393 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 GPR87Q9BY21 358 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 VCX3BQ9H321 246 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 MTHFD2LQ9H903 347 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-208ENST00000553868 SEC14L3Q9UDX4 400 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 ZNF232Q9UNY5 417 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 WDR45Q9Y484 360 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 OR10H1Q9Y4A9 318 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 GPC6Q9Y625 555 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-208ENST00000553868 NUP214P35658 2090 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-208ENST00000553868 MYO7BQ6PIF6 2116 aa13.34□□□□□ -0.27
SHMT2-208ENST00000553868 LOC102723996A0A087X1L8 192 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 HRKO00198 91 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 DEAF1O75398 565 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 GCM2O75603 506 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 ALPPP05187 535 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 CHRM4P08173 479 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 DRD5P21918 477 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 SESN3P58005 492 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 FUT5Q11128 374 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 MAPK11Q15759 364 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 CYP27C1Q4G0S4 372 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 IFI44LQ53G44 452 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 RPS26P11Q5JNZ5 115 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 WDR53Q7Z5U6 358 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 CDH24Q86UP0 819 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 FJX1Q86VR8 437 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 PEX5LQ8IYB4 626 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 GEMIN6Q8WXD5 167 aaKnown RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 PROX1Q92786 737 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 NACC2Q96BF6 587 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 TAMM41Q96BW9 452 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 VMP1Q96GC9 406 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 HSH2DQ96JZ2 352 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 SDF2Q99470 211 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 ITPAQ9BY32 194 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 ZNF350Q9GZX5 532 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 SLC38A1Q9H2H9 487 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 NKX1-2Q9UD57 310 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 SLC13A4Q9UKG4 626 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 PPIEQ9UNP9 301 aaKnown RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 FARSAQ9Y285 508 aaKnown RBP13.33□□□□□ -0.28
SHMT2-208ENST00000553868 IFT52Q9Y366 437 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 PCDHGB7Q9Y5F8 929 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 KCNE3Q9Y6H6 103 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 DSPPQ9NZW4 1301 aa13.33□□□□□ -0.28
SHMT2-208ENST00000553868 C2orf92A0A1B0GVN3 265 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 PRAMEF27A3QJZ7 478 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 FRG2CA6NGY1 282 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 TIPRLO75663 272 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 KLF7O75840 302 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 MFN2O95140 757 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 OPN1SWP03999 348 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 CLPSP04118 112 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 COX6B1P14854 86 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ITGA2P17301 1181 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 MMP11P24347 488 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 PSMD4P55036 377 aaKnown RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 PSG6Q00889 435 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 LARS2Q15031 903 aaKnown RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 DECR1Q16698 335 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 FAM69BQ5VUD6 431 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 GALNT10Q86SR1 603 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ZNF619Q8N2I2 560 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 FAM86B1Q8N7N1 296 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ST6GALNAC3Q8NDV1 305 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 CATSPER1Q8NEC5 780 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 C17orf47Q8NEP4 570 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 OR8K3Q8NH51 312 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 OIT3Q8WWZ8 545 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 PIK3R3Q92569 461 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 RMND5BQ96G75 393 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 LCORQ96JN0 433 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 BARD1Q99728 777 aaKnown RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 BDH2Q9BUT1 245 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ARMC7Q9H6L4 198 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 TCFL5Q9UL49 500 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 CBLCQ9ULV8 474 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 GPR55Q9Y2T6 319 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ACANP16112 2415 aa13.32□□□□□ -0.28
SHMT2-208ENST00000553868 ACOX3O15254 700 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 KIAA0513O60268 411 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 TPST1O60507 370 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 NME6O75414 186 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-208ENST00000553868 KCNK2O95069 426 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 FABP3P05413 133 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 DBIP07108 87 aaKnown RBP13.31□□□□□ -0.28
SHMT2-208ENST00000553868 UMODP07911 640 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 THBS1P07996 1170 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 LCN1P31025 176 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 GCKP35557 465 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 KRT20P35900 424 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 PIGAP37287 484 aa13.31□□□□□ -0.28
SHMT2-208ENST00000553868 KCNJ5P48544 419 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms