RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SNRPD2P62316 118 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PPP3R1P63098 170 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GALK2Q01415 458 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GPR68Q15743 365 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 CST6Q15828 149 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 MAPK14Q16539 360 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM35AQ53FP2 167 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 THOC7Q6I9Y2 204 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PSRC1Q6PGN9 363 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 BHLHB9Q6PI77 547 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 SYCE2Q6PIF2 218 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF836Q6ZNA1 936 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 KLHL36Q8N4N3 616 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 RAB42Q8N4Z0 105 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM99Q8N816 258 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 BMPERQ8N8U9 685 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 OR4M2Q8NGB6 313 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZCCHC10Q8TBK6 192 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ADAMTS15Q8TE58 950 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 FGF13Q92913 245 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PITHD1Q9GZP4 211 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GALNT9Q9HCQ5 603 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 IL23AQ9NPF7 189 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 MAU2Q9Y6X3 613 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 FAM240BA0A1B0GVZ2 78 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF860A6NHJ4 632 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 C12orf71A8MTZ7 269 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 E9PI62 339 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 SYT5O00445 386 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 KLF4O43474 513 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 AKR7A2O43488 359 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PLOD3O60568 738 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 REM1O75628 298 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 IGHA1P01876 353 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 YES1P07947 543 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 MRPL3P09001 348 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF888P0CJ79 500 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TFPIP10646 304 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 FPR3P25089 353 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 IFNGR2P38484 337 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 OR10A3P58181 314 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ERVK-21P61565 698 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 SIM1P81133 766 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GNA13Q14344 377 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 DUSP5Q16690 384 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PUS10Q3MIT2 529 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TJAP1Q5JTD0 557 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 IDNKQ5T6J7 187 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TANGO2Q6ICL3 276 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF322Q6U7Q0 402 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 LYPD8Q6UX82 237 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 MBOAT2Q6ZWT7 520 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GET4Q7L5D6 327 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 CXXC5Q7LFL8 322 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 VN1R4Q7Z5H5 301 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 OR4E2Q8NGC2 313 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 PFN4Q8NHR9 129 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 DNAJA4Q8WW22 397 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 RAB7BQ96AH8 199 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM43Q9BTV4 400 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ACTRT3Q9BYD9 372 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TTTY10Q9BZA0 68 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 BTBD1Q9H0C5 482 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 UBQLN3Q9H347 655 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ISYNA1Q9NPH2 558 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 RBFOX1Q9NWB1 397 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 THAP10Q9P2Z0 257 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 TNFRSF10DQ9UBN6 386 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF443Q9Y2A4 671 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 STON1Q9Y6Q2 735 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF780BQ9Y6R6 833 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 GON4LQ3T8J9 2241 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 IRGMA1A4Y4 181 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 FAM25AB3EWG3 89 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 FAM25CB3EWG5 89 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 FAM25GB3EWG6 89 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 GTPBP1O00178 669 aaKnown RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 AKAP8O43823 692 aaKnown RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 KAT7O95251 611 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PAHP00439 452 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HLA-DQB1P01920 261 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HLA-DPB1P04440 258 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 TRAPPC2P0DI81 140 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 TRAPPC2BP0DI82 140 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CLUP10909 449 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PRKCAP17252 672 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 MAKP20794 623 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CPN2P22792 545 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 AK4P27144 223 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HTR2AP28223 471 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 SHC1P29353 583 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HTR1FP30939 366 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 EVI2BP34910 448 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 GJA4P35212 333 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ANXA11P50995 505 aaKnown RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF136P52737 540 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ABATP80404 500 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 RPE65Q16518 533 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 DECR1Q16698 335 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms