RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ETV4P43268 484 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 PRIM2P49643 509 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 SIRPAP78324 504 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 MLC1Q15049 377 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS29-207ENST00000549970 GLYR1Q49A26 553 aaPredicted RBP14.72□□□□□ -0.05
VPS29-207ENST00000549970 CPTPQ5TA50 214 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 OR2A2Q6IF42 318 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 VWA1Q6PCB0 445 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 ZCCHC12Q6PEW1 402 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 NUDCD3Q8IVD9 361 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 KRTCAP2Q8N6L1 136 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 FNDC9Q8TBE3 224 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 FAM110BQ8TC76 370 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 NUDT8Q8WV74 236 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 NINJ1Q92982 152 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 TUBGCP3Q96CW5 907 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 ZNF845Q96IR2 970 aaPredicted RBP14.72□□□□□ -0.05
VPS29-207ENST00000549970 ZNF469Q96JG9 3925 aaPredicted RBP14.72□□□□□ -0.05
VPS29-207ENST00000549970 NUP214P35658 2090 aaPredicted RBP14.72□□□□□ -0.05
VPS29-207ENST00000549970 WDR91A4D1P6 747 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 A8MXE2 369 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 TNFRSF21O75509 655 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 LYPLA1O75608 230 aaPredicted RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 HSPA4LO95757 839 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 HMGN2P05204 90 aaKnown RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 NGFRP08138 427 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 HPGDP15428 266 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 TBXA2RP21731 343 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 SERPINB4P48594 390 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 RPS3AP61247 264 aaKnown RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 EEF1A1P68104 462 aaKnown RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 POU6F2P78424 691 aaPredicted RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 TP53BP2Q13625 1128 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 PON3Q15166 354 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 POU4F3Q15319 338 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 EEF1A1P5Q5VTE0 462 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 PPP4R4Q6NUP7 873 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 CDS1Q92903 461 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 STARD4Q96DR4 205 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 SH3YL1Q96HL8 342 aaPredicted RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 TMEM109Q9BVC6 243 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 ATAD3AQ9NVI7 634 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 AP4B1Q9Y6B7 739 aa14.71□□□□□ -0.05
VPS29-207ENST00000549970 PRRC2AP48634 2157 aaKnown RBP14.71□□□□□ -0.05
VPS29-207ENST00000549970 SH3D21A4FU49 640 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 SCDO00767 359 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 MSTNO14793 375 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 RGS16O15492 202 aaPredicted RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 CTIFO43310 598 aaKnown RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 ITM2AO43736 263 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 C6orf47O95873 294 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 CRHP06850 196 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 DNASE1P24855 282 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 CCT3P49368 545 aaKnown RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 ZNF844Q08AG5 666 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 PDCD2Q16342 344 aaPredicted RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 SGCBQ16585 318 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 TMEM44Q2T9K0 475 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 SPDYE7PQ495Y7 208 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 EXOSC6Q5RKV6 272 aaKnown RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 BTLAQ7Z6A9 289 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 MREGQ8N565 214 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 METTL25Q8N6Q8 603 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 OR5P2Q8WZ92 322 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 ZBTB9Q96C00 473 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 PGM2Q96G03 612 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 PPP1R36Q96LQ0 422 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 DACH2Q96NX9 599 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 STACQ99469 402 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 PRPF18Q99633 342 aaKnown RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 NPAS1Q99742 590 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 BTBD2Q9BX70 525 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 OPN3Q9H1Y3 402 aaPredicted RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 CXorf36Q9H7Y0 433 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 ZNF395Q9H8N7 513 aaPredicted RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 UBQLN4Q9NRR5 601 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 DUSP22Q9NRW4 184 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 GIN1Q9NXP7 522 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 EIF3LQ9Y262 564 aaKnown RBP14.7□□□□□ -0.06
VPS29-207ENST00000549970 ZNF175Q9Y473 711 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 VPS13CQ709C8 3753 aa14.7□□□□□ -0.06
VPS29-207ENST00000549970 A0A087WZY1 265 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 EIF1AYO14602 144 aaKnown RBP14.69□□□□□ -0.06
VPS29-207ENST00000549970 CFLARO15519 480 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 G6PDP11413 515 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 ZNF17P17021 662 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 LCN1P31025 176 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 KIR2DL2P43627 348 aaPredicted RBP14.69□□□□□ -0.06
VPS29-207ENST00000549970 EIF1AXP47813 144 aaKnown RBP14.69□□□□□ -0.06
VPS29-207ENST00000549970 FAM27E3Q08E93 113 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 CD226Q15762 336 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 CHI3L2Q15782 390 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 LSM12Q3MHD2 195 aaKnown RBP14.69□□□□□ -0.06
VPS29-207ENST00000549970 CDC73Q6P1J9 531 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 GGNQ86UU5 652 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 NATD1Q8N6N6 113 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 ZNF781Q8N8C0 355 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 OR56A1Q8NGH5 318 aa14.69□□□□□ -0.06
VPS29-207ENST00000549970 COQ8BQ96D53 544 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms