RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PPP4R1LQ9P1A2 415 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ING1Q9UK53 422 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 MCTS1Q9ULC4 181 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PACSIN2Q9UNF0 486 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PTGDR2Q9Y5Y4 395 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CMYA5Q8N3K9 4069 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PRKDCP78527 4128 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 HEATR1Q9H583 2144 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 GOLGA6L10A0A0M3HER8 536 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TCRBV7S3A2A0A539 114 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NPEPPSL1A6NEC2 478 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 C9JVG2 144 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 AP3B1O00203 1094 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PGRMC2O15173 223 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 EEDO75530 441 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 GCM2O75603 506 aaPredicted RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SLU7O95391 586 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 BCL10O95999 233 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 GBAP04062 536 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NUDT17P0C025 328 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SLC35E2BP0CK96 405 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SLC35E2P0CK97 266 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NAGAP17050 411 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TPSB2P20231 275 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 IL11P20809 199 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PCMT1P22061 227 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 IL12BP29460 328 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 AGTR1P30556 359 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 KRT20P35900 424 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 CHN2P52757 468 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 HADHBP55084 474 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 HNRNPH2P55795 449 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TPM4P67936 248 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TIAL1Q01085 375 aaKnown RBP eCLIP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TNFRSF17Q02223 184 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 KIF5AQ12840 1032 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 ITGADQ13349 1161 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TPSAB1Q15661 275 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PPP1R3AQ16821 1122 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 HSP90AA5PQ58FG0 334 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 RBM20Q5T481 1227 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NXNQ6DKJ4 435 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 FAM111BQ6SJ93 734 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 CYP20A1Q6UW02 462 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TMEM108Q6UXF1 575 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 B3GLCTQ6Y288 498 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 DEF8Q6ZN54 512 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 FRA10AC1Q70Z53 315 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SLC46A3Q7Z3Q1 461 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 ZAR1Q86SH2 424 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 GALNT10Q86SR1 603 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 GLCCI1Q86VQ1 547 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TSPYL5Q86VY4 417 aaPredicted RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 CREG2Q8IUH2 290 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TUSC5Q8IXB3 177 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF540Q8NDQ6 660 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 OR52N5Q8NH56 324 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 OR10D3Q8NH80 312 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 C22orf15Q8WYQ4 148 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 ANKRD7Q92527 254 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 TAF15Q92804 592 aaKnown RBP eCLIP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 UBE2FQ969M7 185 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 ESAMQ96AP7 390 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 RGMAQ96B86 450 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 EFHD2Q96C19 240 aaPredicted RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 REXO5Q96IC2 774 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 COL21A1Q96P44 957 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SORCS2Q96PQ0 1159 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 HBEGFQ99075 208 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SLC6A7Q99884 636 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 JAM3Q9BX67 310 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SUCNR1Q9BXA5 334 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 POTEKPQ9BYX7 375 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 OR51B5Q9H339 312 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NARFLQ9H6Q4 476 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PTGES2Q9H7Z7 377 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NT5DC2Q9H857 520 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 WDR41Q9HAD4 459 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 MYNNQ9NPC7 610 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 SMYD2Q9NRG4 433 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 DDX28Q9NUL7 540 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 HIF1ANQ9NWT6 349 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 MS4A12Q9NXJ0 267 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 NPAP1Q9NZP6 1156 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PAK5Q9P286 719 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 STOML1Q9UBI4 398 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 PHF11Q9UIL8 331 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 FBXO5Q9UKT4 447 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 IKZF3Q9UKT9 509 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 USP22Q9UPT9 525 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 VDAC3Q9Y277 283 aa4.2□□□□□ -1.74
LIMS1-214ENST00000542845 MRPS18CQ9Y3D5 142 aaKnown RBP4.2□□□□□ -1.74
LIMS1-214ENST00000542845 LOC105371242A0A075B767 164 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 A0A1W2PR48 441 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 HMX2A2RU54 273 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 B4DXG7 233 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 GOLGA8MH3BSY2 632 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 SCDO00767 359 aa4.19□□□□□ -1.74
LIMS1-214ENST00000542845 TNFSF11O14788 317 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms