RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	KDM4E	B2RXH2	506 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	LYRM1	O43325	122 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	HLA-DQB1	P01920	261 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF888	P0CJ79	500 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ATXN8OS	P0DMR3	200 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	CD8B	P10966	210 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	DRD2	P14416	443 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	GNS	P15586	552 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	PTN	P21246	168 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	TPMT	P51580	245 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	FAP	Q12884	760 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF311	Q5JNZ3	666 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF761	Q86XN6	746 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	VRK2	Q86Y07	508 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ARIH2OS	Q8N7S6	290 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	TAS2R7	Q9NYW3	318 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ENTPD4	Q9Y227	616 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	LAMA1	P25391	3075 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	LOC102723532	A0A0G2JNH3	316 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	GABRP	O00591	440 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	DVL2	O14641	736 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	PRKAR1A	P10644	381 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TRHR	P34981	398 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	EVX1	P49640	407 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ID2	Q02363	134 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CHRNE	Q04844	493 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF155	Q12901	538 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TSPAN31	Q12999	210 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	RAB30	Q15771	203 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CLPP	Q16740	277 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	DEFB134	Q4QY38	66 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CCDC58	Q4VC31	144 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	B3GLCT	Q6Y288	498 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	RRM2B	Q7LG56	351 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	MRGPRE	Q86SM8	312 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TCTE3	Q8IZS6	198 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	BBS1	Q8NFJ9	593 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	OR4Q3	Q8NH05	313 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	GRPEL2	Q8TAA5	225 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	WDR92	Q96MX6	357 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	GFM1	Q96RP9	751 aa	Known RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	NTNG1	Q9Y2I2	539 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	SMLR1	H3BR10	107 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	PVR	P15151	417 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CTBP2	P56545	445 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	NFATC4	Q14934	902 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	MZT2B	Q6NZ67	158 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	MTSS1L	Q765P7	747 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	VN1R4	Q7Z5H5	301 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	POGLUT1	Q8NBL1	392 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	OR7G1	Q8NGA0	311 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF764	Q96H86	408 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	PINK1	Q9BXM7	581 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	PCDHGB7	Q9Y5F8	929 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204		A0A0G2JPF8	293 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	OR6C74	A6NCV1	312 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	HNRNPCL2	B2RXH8	293 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	HNRNPCL3	B7ZW38	293 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ERVH48-1	M5A8F1	160 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CASC3	O15234	703 aa	Known RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	SLC2A10	O95528	541 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM157B	P0CG42	384 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	HNRNPCL4	P0DMR1	293 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	GPR4	P46093	362 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	OMP	P47874	163 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	RAB25	P57735	213 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	GPLD1	P80108	840 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ABAT	P80404	500 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CAMK2B	Q13554	666 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	CCDC85B	Q15834	202 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	LYPD8	Q6UX82	237 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	RASSF6	Q6ZTQ3	369 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	NKAIN4	Q8IVV8	208 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	DUSP18	Q8NEJ0	188 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ZFAND1	Q8TCF1	268 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEM43	Q9BTV4	400 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	KIR3DX1	Q9H7L2	352 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEM74B	Q9NUR3	256 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	KLHL21	Q9UJP4	597 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	LIPT1	Q9Y234	373 aa		11.67	□□□□□ -0.54
RNF4-222	ENST00000541204	SURF4	O15260	269 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	PROM1	O43490	865 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	HLA-DPB1	P04440	258 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	ERP29	P30040	261 aa	Known RBP	11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	AHR	P35869	848 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	ATP6V1E1	P36543	226 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	LTBR	P36941	435 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	IFNGR2	P38484	337 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	HTR2B	P41595	481 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	INPP1	P49441	399 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	RNF144A	P50876	292 aa	Predicted RBP	11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	GNG2	P59768	71 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	SNRPD2	P62316	118 aa	Known RBP	11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	SIM1	P81133	766 aa	Predicted RBP	11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	TRAM2	Q15035	370 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	C6orf132	Q5T0Z8	1188 aa		11.66	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF425	Q6IV72	752 aa		11.66	□□□□□ -0.54

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