RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 KLHL26Q53HC5 615 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 TIGD3Q6B0B8 471 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 EIF3MQ7L2H7 374 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 PRICKLE2Q7Z3G6 844 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 PATL1Q86TB9 770 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 PGAM4Q8N0Y7 254 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 GRHL3Q8TE85 626 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 SLC35B4Q969S0 331 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 NTNG2Q96CW9 530 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 REXO5Q96IC2 774 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 NODALQ96S42 347 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 GPATCH1Q9BRR8 931 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 PPP4R1LQ9P1A2 415 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 CSAG2Q9Y5P2 127 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 KCNE3Q9Y6H6 103 aa16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 UBR5O95071 2799 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-210ENST00000540931 IGLV3-32A0A0A0MS00 114 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 CCT8L1PA6NM43 557 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 FAM47E-STBD1D6RA91 191 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 NPIPB9F8W1W9 429 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 GTPBP1O00178 669 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 SNPHO15079 494 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 GMNNO75496 209 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 ANGPTL1O95841 491 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 IGKV1D-16P01601 117 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 THBS1P07996 1170 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 UQCRBP14927 111 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 IL7RP16871 459 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 SUMO3P55854 103 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 EEFSECP57772 596 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 MTPNP58546 118 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 SCARB2Q14108 478 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 CAPRIN1Q14444 709 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 GPR68Q15743 365 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 CCNJQ5T5M9 372 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 PRAMEF20Q5VT98 475 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 TYW3Q6IPR3 259 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 FRRS1Q6ZNA5 592 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 PTRH1Q86Y79 214 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 PLCZ1Q86YW0 608 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 ZNF440Q8IYI8 595 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 OR4C3Q8NH37 302 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 OR10A6Q8NH74 314 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 POP5Q969H6 163 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 TMEM19Q96HH6 336 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 TREX2Q9BQ50 279 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 STOML1Q9UBI4 398 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 MKLN1Q9UL63 735 aa16.02■□□□□ 0.16
CLSTN3-210ENST00000540931 BOD1L1Q8NFC6 3051 aa16.02■□□□□ 0.15
CLSTN3-210ENST00000540931 DSPPQ9NZW4 1301 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 EXPH5Q8NEV8 1989 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 AGAP5A6NIR3 686 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 LINC01387J3KSC0 135 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 TFECO14948 347 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 SUV39H1O43463 412 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 PCGF2P35227 344 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 CASP9P55211 416 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 PSME3P61289 254 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 SRSF1Q07955 248 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 SYPL1Q16563 259 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 VMACQ2NL98 169 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 GLYR1Q49A26 553 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 LIN52Q52LA3 116 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 EIPR1Q53HC9 387 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 SAMD4BQ5PRF9 694 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 C8orf82Q6P1X6 216 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 FAM109AQ8N4B1 249 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 OR2T12Q8NG77 320 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 OR4K17Q8NGC6 315 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 FAR1Q8WVX9 515 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 OTUB1Q96FW1 271 aaPredicted RBP16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 TTTY12Q9BZ98 90 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC38A1Q9H2H9 487 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 OLAHQ9NV23 265 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 ARL8BQ9NVJ2 186 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 ABCD2Q9UBJ2 740 aa16.01■□□□□ 0.15
CLSTN3-210ENST00000540931 A0A087WZY1 265 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 SERINC4A6NH21 518 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 FAM220BPB1ANY3 271 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 B2RBV5 119 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 FCMRO60667 390 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 UGT2B17O75795 530 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 GLSO94925 669 aaPredicted RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 PGM3O95394 542 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 NID1P14543 1247 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 CD1EP15812 388 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 DNASE1L1P49184 302 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 DSCR4P56555 118 aaPredicted RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 GPR85P60893 370 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 PPIAP62937 165 aaKnown RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 KCNJ10P78508 379 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 CHRNEQ04844 493 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 FOXO1Q12778 655 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 ELOAQ14241 798 aaKnown RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC10A1Q14973 349 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 INPP5JQ15735 1006 aaPredicted RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16■□□□□ 0.15
CLSTN3-210ENST00000540931 CALHM3Q86XJ0 350 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC15A3Q8IY34 581 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms