RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TBC1D17Q9HA65 648 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 ADAP2Q9NPF8 381 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 KRCC1Q9NPI7 259 aaPredicted RBP12.26□□□□□ -0.45
LDLR-203ENST00000535915 TMEM74BQ9NUR3 256 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 MED17Q9NVC6 651 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 PTGFRNQ9P2B2 879 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 CDH10Q9Y6N8 788 aa12.26□□□□□ -0.45
LDLR-203ENST00000535915 KLF4O43474 513 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CHRNB1P11230 501 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CPMP14384 443 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 FGF9P31371 208 aaPredicted RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 GCGRP47871 477 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 RNF144AP50876 292 aaPredicted RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 ZNF791Q3KP31 576 aaPredicted RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 EIPR1Q53HC9 387 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 NXNL2Q5VZ03 156 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 ZNF544Q6NX49 715 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 XKRXQ6PP77 449 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 UBE2Q1Q7Z7E8 422 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 RANBP3LQ86VV4 465 aaPredicted RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 TMEFF1Q8IYR6 380 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 UBQLNLQ8IYU4 475 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 KLHL36Q8N4N3 616 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 ZNF485Q8NCK3 441 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 FLVCR1-AS1Q8TAF5 88 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 SECISBP2Q96T21 854 aaKnown RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 MCOLN1Q9GZU1 580 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CD93Q9NPY3 652 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 NCKAP1Q9Y2A7 1128 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 GRIP1Q9Y3R0 1128 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 LRRC72A6NJI9 287 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 FAM183AA6NL82 134 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CHST10O43529 356 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 AKAP8O43823 692 aaKnown RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 LDB3O75112 727 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 SMIM10L1P0DMW3 83 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CELP19835 753 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 HTR1FP30939 366 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 HTR3AP46098 478 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 EEF1A1P68104 462 aaKnown RBP12.25□□□□□ -0.45
LDLR-203ENST00000535915 DUSP8Q13202 625 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 GPR50Q13585 617 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 FIGLAQ6QHK4 219 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 USP53Q70EK8 1073 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 RAB43Q86YS6 212 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 TOR1AIP2Q8NFQ8 470 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 SMIM10Q96HG1 83 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 RIPOR3Q96MK2 946 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 HDHD5Q9BXW7 423 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 CBLCQ9ULV8 474 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 PRELID1Q9Y255 219 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 SLC22A7Q9Y694 548 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 USP34Q70CQ2 3546 aa12.25□□□□□ -0.45
LDLR-203ENST00000535915 LOC105369274A0A096LPK9 316 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 LOC102723532A0A0G2JNH3 316 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 TRDV1A0A1B0GX56 115 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 OR6C74A6NCV1 312 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 SOCS6O14544 535 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 HMGN1P05114 100 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 KRT8P05787 483 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 HOXC4P09017 264 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 GKN3PP0CG01 181 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 PRG2P13727 222 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 ZNF10P21506 573 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 ZNF136P52737 540 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 PYDC2Q56P42 97 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 FCRL6Q6DN72 434 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 CD200R1LQ6Q8B3 271 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 ABHD13Q7L211 337 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 CPOQ8IVL8 374 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 OR4N4Q8N0Y3 316 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 FAM181AQ8N9Y4 354 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 CAMKVQ8NCB2 501 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 SPRYD4Q8WW59 207 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 NACC2Q96BF6 587 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 CDCA3Q99618 268 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 DPH1Q9BZG8 443 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 HINT3Q9NQE9 182 aaKnown RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 NPAP1Q9NZP6 1156 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 COMMD3Q9UBI1 195 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 PCOLCE2Q9UKZ9 415 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 EXOGQ9Y2C4 368 aaKnown RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 TFECO14948 347 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 THBS1P07996 1170 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 ZNF155Q12901 538 aaPredicted RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 MAPK14Q16539 360 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 DCST2Q5T1A1 773 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 UTS2BQ765I0 119 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 CXXC5Q7LFL8 322 aaKnown RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 TRIM48Q8IWZ4 208 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 ZNF619Q8N2I2 560 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 GDPD1Q8N9F7 314 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 BMFQ96LC9 184 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 DCLRE1CQ96SD1 692 aaKnown RBP12.24□□□□□ -0.45
LDLR-203ENST00000535915 UBQLN3Q9H347 655 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 PIGUQ9H490 435 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 FBRSQ9HAH7 460 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 ACTR10Q9NZ32 417 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 TNFRSF10DQ9UBN6 386 aa12.24□□□□□ -0.45
LDLR-203ENST00000535915 EYSQ5T1H1 3165 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms