RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TLDC2A0PJX2 215 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 SHISA8B8ZZ34 492 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 SCDO00767 359 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 NKX2-2O95096 273 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 IGKV1D-16P01601 117 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 ZNF17P17021 662 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 SDC1P18827 310 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 TBXA2RP21731 343 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 HPCAL1P37235 193 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 PDSS1Q5T2R2 415 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 FIGNL1Q6PIW4 674 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 ZNF550Q7Z398 422 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 METTL25Q8N6Q8 603 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 EIF1ADQ8N9N8 165 aaKnown RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 GATSQ8NAP1 163 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 EPS8L3Q8TE67 593 aaKnown RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 ZBTB8AQ96BR9 441 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 TRIM44Q96DX7 344 aaPredicted RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 ZNF764Q96H86 408 aaPredicted RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 C18orf12Q96KH6 178 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 GATA5Q9BWX5 397 aaPredicted RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 ZNF395Q9H8N7 513 aaPredicted RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 UBQLN4Q9NRR5 601 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 ACSS1Q9NUB1 689 aaPredicted RBP13.25□□□□□ -0.29
VPS28-215ENST00000531924 BAIAP2L1Q9UHR4 511 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 CCL27Q9Y4X3 112 aa13.25□□□□□ -0.29
VPS28-215ENST00000531924 TMEM114B3SHH9 223 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 ALG1L2C9J202 215 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 NPIPB8E9PQR5 432 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 TBX19O60806 448 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 OXSR1O95747 527 aaPredicted RBP13.24□□□□□ -0.29
VPS28-215ENST00000531924 HSPA4LO95757 839 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 NGFRP08138 427 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 ATP6V1C1P21283 382 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 CRYGSP22914 178 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 MAPK1P28482 360 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 LCN1P31025 176 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 HOXC12P31275 282 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 RPL3P39023 403 aaKnown RBP13.24□□□□□ -0.29
VPS28-215ENST00000531924 PRIM2P49643 509 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 SPDYE7PQ495Y7 208 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 RFTN2Q52LD8 501 aaPredicted RBP13.24□□□□□ -0.29
VPS28-215ENST00000531924 ANKRD34AQ69YU3 496 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 ZCCHC12Q6PEW1 402 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 APOOLQ6UXV4 268 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 STK32CQ86UX6 486 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 MISPQ8IVT2 679 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 SLC16A11Q8NCK7 471 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 OR4C3Q8NH37 302 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 MTERF3Q96E29 417 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 SH3YL1Q96HL8 342 aaPredicted RBP13.24□□□□□ -0.29
VPS28-215ENST00000531924 REXO5Q96IC2 774 aaKnown RBP13.24□□□□□ -0.29
VPS28-215ENST00000531924 CCL19Q99731 98 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 DLL4Q9NR61 685 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 SNX8Q9Y5X2 465 aa13.24□□□□□ -0.29
VPS28-215ENST00000531924 A0A1W2PPR1 153 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 A0A1W2PRB8 838 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 DEFB108AA8MXU0 73 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 AQP8O94778 261 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 KCNK2O95069 426 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 OPN1LWP04000 364 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 INHBBP09529 407 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 ACP2P11117 423 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 EFNA1P20827 205 aaPredicted RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 POU6F2P78424 691 aaPredicted RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 SLC18A2Q05940 514 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 PCLAFQ15004 111 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 ACKR1Q16570 336 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 DUSP5Q16690 384 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS28-215ENST00000531924 ZNF385BQ569K4 471 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 Q5PR19 223 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 CPTPQ5TA50 214 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 KANK2Q63ZY3 851 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GTF2IRD2BQ6EKJ0 949 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 MFSD12Q6NUT3 480 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 LRIG3Q6UXM1 1119 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 Q6ZSR9 355 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GTF2IRD2Q86UP8 949 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GGNQ86UU5 652 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GTPBP8Q8N3Z3 284 aaPredicted RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 OR6K3Q8NGY3 331 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 OR2T11Q8NH01 316 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 OR10D3Q8NH80 312 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 ACTRT2Q8TDY3 377 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 TWIST2Q8WVJ9 160 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 CAVIN3Q969G5 261 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 C16orf58Q96GQ5 468 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GMPPAQ96IJ6 420 aaPredicted RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 PPP3R2Q96LZ3 170 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 RNF145Q96MT1 663 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 PIP5K1AQ99755 562 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 BTBD2Q9BX70 525 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 TMEM185BQ9H7F4 350 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 GLRX2Q9NS18 164 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 ZCCHC3Q9NUD5 404 aaKnown RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 MED17Q9NVC6 651 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 CLEC4AQ9UMR7 237 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 TRAF6Q9Y4K3 522 aa13.23□□□□□ -0.29
VPS28-215ENST00000531924 DNAJC15Q9Y5T4 150 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms