RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SEMA4CQ9C0C4 833 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 SSUH2Q9Y2M2 353 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 MAGED1Q9Y5V3 778 aaPredicted RBP19.58■□□□□ 0.72
VPS28-212ENST00000530836 URB1O60287 2271 aaKnown RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 LOC101059948A0A1B0GTJ6 334 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 J3KTA2 159 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 M0R3H8 397 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 TO15178 435 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 H1F0P07305 194 aaKnown RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 ANXA8P13928 327 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 CDH2P19022 906 aaPredicted RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 LIMS1P48059 325 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 PPP1R8Q12972 351 aaKnown RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 EBPQ15125 230 aaKnown RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 ZNF141Q15928 474 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 FAAH2Q6GMR7 532 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 FAM198BQ6UWH4 519 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 ZNF836Q6ZNA1 936 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 CPEB2Q7Z5Q1 589 aaKnown RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 SPACA3Q8IXA5 215 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 CMIPQ8IY22 773 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 HS3ST5Q8IZT8 346 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 TAGAPQ8N103 731 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 OR4D11Q8NGI4 311 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 SLC35B4Q969S0 331 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 ADIPOR1Q96A54 375 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 HSPBAP1Q96EW2 488 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 DCBLD2Q96PD2 775 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 LPAR4Q99677 370 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 ANKRD60Q9BZ19 345 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 NMNAT1Q9HAN9 279 aaPredicted RBP19.57■□□□□ 0.72
VPS28-212ENST00000530836 FBXO34Q9NWN3 711 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 KIF17Q9P2E2 1029 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 TMCC3Q9ULS5 477 aa19.57■□□□□ 0.72
VPS28-212ENST00000530836 CCDC88CQ9P219 2028 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 A0A087WV48 116 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 A0A1W2PRQ8 180 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 FFAR1O14842 300 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 HS6ST1O60243 411 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 CNOT3O75175 753 aaKnown RBP19.56■□□□□ 0.72
VPS28-212ENST00000530836 TCN2P20062 427 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 GPR143P51810 404 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 RGS8P57771 180 aaPredicted RBP19.56■□□□□ 0.72
VPS28-212ENST00000530836 DGCR6Q14129 220 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 NCF4Q15080 339 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 SLC36A3Q495N2 470 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 KDM4DQ6B0I6 523 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 FAHD1Q6P587 224 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 LRRC69Q6ZNQ3 347 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 LACC1Q8IV20 430 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 LINC00471Q8N535 108 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 ZNF321PQ8N8H1 164 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 OR4N2Q8NGD1 307 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 SMURF2Q9HAU4 748 aa19.56■□□□□ 0.72
VPS28-212ENST00000530836 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.56■□□□□ 0.72
VPS28-212ENST00000530836 CDHR4A6H8M9 788 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 AP3D1O14617 1153 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 TERTO14746 1132 aaKnown RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 OXSR1O95747 527 aaPredicted RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 IL33O95760 270 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 RPSAP08865 295 aaKnown RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 PRKACGP22612 351 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 IGFBP5P24593 272 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 CAPGP40121 348 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 ATP12AP54707 1039 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 MAPK14Q16539 360 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 HMGN2P46Q86SG4 172 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 COMTD1Q86VU5 262 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 RANBP3LQ86VV4 465 aaPredicted RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 RBM45Q8IUH3 476 aaKnown RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 GRAMD2AQ8IUY3 354 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 C9orf40Q8IXQ3 194 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 ATG16L2Q8NAA4 619 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 ZSCAN1Q8NBB4 408 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 NFAM1Q8NET5 270 aaPredicted RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 OR8K3Q8NH51 312 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 CT55Q8WUE5 264 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 TP53INP1Q96A56 240 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 ALPK1Q96QP1 1244 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 FNDC11Q9BVV2 318 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 WWTR1Q9GZV5 400 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 NXF5Q9H1B4 397 aaKnown RBP19.55■□□□□ 0.72
VPS28-212ENST00000530836 WDR70Q9NW82 654 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 ZMIZ1Q9ULJ6 1067 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 A4GNTQ9UNA3 340 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 CHST2Q9Y4C5 530 aa19.55■□□□□ 0.72
VPS28-212ENST00000530836 C21orf140B9A014 251 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 NPIPB9F8W1W9 429 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 PEX12O00623 359 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 FMO6PO60774 539 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 CCNB2O95067 398 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 IGKV1D-16P01601 117 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 IGHEP01854 428 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 DLSTP36957 453 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 RFX3P48380 749 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 GANABQ14697 944 aaKnown RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 PDK3Q15120 406 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 EXOC3L2Q2M3D2 409 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 MRPL2Q5T653 305 aaKnown RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 TTC23Q5W5X9 447 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms