RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 WDR60Q8WVS4 1066 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 SLC39A7Q92504 469 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 FIG4Q92562 907 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 ARSGQ96EG1 525 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 SGCZQ96LD1 299 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 JSRP1Q96MG2 331 aaPredicted RBP12.56□□□□□ -0.4
CD44-224ENST00000526669 CADM1Q9BY67 442 aaKnown RBP12.56□□□□□ -0.4
CD44-224ENST00000526669 TBL1XR1Q9BZK7 514 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 SAP130Q9H0E3 1048 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 PCDHAC1Q9H158 963 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 PROK2Q9HC23 129 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 POLE3Q9NRF9 147 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 UBQLN4Q9NRR5 601 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 CD300AQ9UGN4 299 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 TUBD1Q9UJT1 453 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 LHX6Q9UPM6 363 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 SHANK1Q9Y566 2161 aa12.56□□□□□ -0.4
CD44-224ENST00000526669 KMT2BQ9UMN6 2715 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 TRAV17A0A0B4J275 112 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 ERICH4A6NGS2 130 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 CLDN24A6NM45 220 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 NPIPB9F8W1W9 429 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 CXCR6O00574 342 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 OIP5O43482 229 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 NME2P1O60361 137 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 DNAJA2O60884 412 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 GCM2O75603 506 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 DNAJC8O75937 253 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 ANGPTL1O95841 491 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 HSD17B1P14061 328 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 TBXA2RP21731 343 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 NME2P22392 152 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 MEOX1P50221 254 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 RASSF2P50749 326 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 KCNJ2P63252 427 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 ZNF169Q14929 603 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 CD226Q15762 336 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 OR5M10Q6IEU7 315 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 ZNF836Q6ZNA1 936 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 PTRH1Q86Y79 214 aaKnown RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 HPS6Q86YV9 775 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 SULF2Q8IWU5 870 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 PEX5LQ8IYB4 626 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 OR52P1PQ8NH57 321 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 PHOSPHO1Q8TCT1 267 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 CCDC124Q96CT7 223 aaKnown RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 SCMH1Q96GD3 660 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 SH3YL1Q96HL8 342 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 DOHHQ9BU89 302 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 BCL2L10Q9HD36 194 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 TUBA8Q9NY65 449 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 CNIH4Q9P003 139 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 PRPF19Q9UMS4 504 aaKnown RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 ABCG2Q9UNQ0 655 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 ZNF443Q9Y2A4 671 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 KLF13Q9Y2Y9 288 aaPredicted RBP12.55□□□□□ -0.4
CD44-224ENST00000526669 WIF1Q9Y5W5 379 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 DSPPQ9NZW4 1301 aa12.55□□□□□ -0.4
CD44-224ENST00000526669 ADAM10O14672 748 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 GSC2O15499 205 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PEX1O43933 1283 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 BCAS1O75363 584 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 CYP7B1O75881 506 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 IL7RP16871 459 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 CNR1P21554 472 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 RPS4Y1P22090 263 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 HTR1EP28566 365 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 LCN1P31025 176 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PGM1P36871 562 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 MASP1P48740 699 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 CLK3P49761 638 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 GAS1P54826 345 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PCBP3P57721 371 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 DMTNQ08495 405 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 ZNF141Q15928 474 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 ZSCAN26Q16670 478 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PLEKHN1Q494U1 663 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 INTS11Q5TA45 600 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 PRAMEF8Q5VWM4 474 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PRAMEF7Q5VXH5 474 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 SLC6A19Q695T7 634 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 Q6ZS92 163 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 SLC30A8Q8IWU4 369 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 METTL25Q8N6Q8 603 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 SMYD1Q8NB12 490 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 ZNF527Q8NB42 609 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 TMEM178AQ8NBL3 297 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 OR2M7Q8NG81 312 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 RNF138Q8WVD3 245 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 FAM162AQ96A26 154 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 MCUR1Q96AQ8 359 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 TAMM41Q96BW9 452 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 ZNF607Q96SK3 696 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 SECISBP2Q96T21 854 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 RSPO3Q9BXY4 272 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 ANGPTL4Q9BY76 406 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 HOXD1Q9GZZ0 328 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 SLC25A18Q9H1K4 315 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 LRMDAQ9H2I8 198 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms