RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RBM41Q96IZ5 413 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELMO2Q96JJ3 720 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERAC1Q96JX3 654 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADGRG7Q96K78 797 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRR1Q96L50 414 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 JSRP1Q96MG2 331 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLT1D1Q96MS3 346 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF578Q96N58 590 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AMDHD1Q96NU7 426 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AGAP4Q96P64 663 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OPALINQ96PE5 141 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF317Q96PQ6 595 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSPG4P5Q96PW8 444 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PANX1Q96RD7 426 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERGIC2Q96RQ1 377 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL4I1Q96RQ9 567 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNN2Q99439 309 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIT2Q99578 217 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDCA3Q99618 268 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 COPS8Q99627 209 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL12RB2Q99665 862 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP3K3Q99759 626 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CMKLR1Q99788 373 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSG101Q99816 390 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CITED1Q99966 193 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC3Q9BQI4 270 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACBD6Q9BR61 282 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCTN5Q9BTE1 182 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DPH7Q9BTV6 452 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FUCA2Q9BTY2 467 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ST6GALNAC5Q9BVH7 336 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TM2D2Q9BX73 214 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSSK1BQ9BXA7 367 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 BBS2Q9BXC9 721 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1QTNF4Q9BXJ3 329 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DGCR6LQ9BY27 220 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANGPTL4Q9BY76 406 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NLNQ9BYT8 704 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRMD8P1Q9BZ68 369 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB34Q9BZG1 259 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SHCBP1LQ9BZQ2 653 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TM6SF2Q9BZW4 377 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 API5Q9BZZ5 524 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIM9Q9C026 710 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC39A8Q9C0K1 460 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STRADBQ9C0K7 418 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDEL1Q9GZM8 345 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 VN1R1Q9GZP7 353 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPFFR1Q9GZQ6 430 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LHPPQ9H008 270 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB6CQ9H0N0 254 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM49AQ9H0Q0 323 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB1BQ9H0U4 201 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEMA6AQ9H2E6 1030 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRMDAQ9H2I8 198 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARRDC1-AS1Q9H2J1 176 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RHBGQ9H310 441 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 VCX3BQ9H321 246 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CENPHQ9H3R5 247 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRN3Q9H3W5 708 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DPEP2Q9H4A9 486 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAV1Q9H4B6 383 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FBXO44Q9H4M3 255 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLHL31Q9H511 634 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELOVL6Q9H5J4 265 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NARFLQ9H6Q4 476 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DHX33Q9H6R0 707 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KAT8Q9H7Z6 458 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TLE6Q9H808 572 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 METTL8Q9H825 291 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NIPAL2Q9H841 368 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBTD1Q9HAC8 227 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLK4Q9HAZ1 481 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IL1RL2Q9HB29 575 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LY9Q9HBG7 655 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC38A10Q9HBR0 1119 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MOV10Q9HCE1 1003 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAVER2Q9HCJ3 691 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK1G1Q9HCP0 422 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LYRM4Q9HD34 91 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q9N2K0 584 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NT5MQ9NPB1 228 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYOZ2Q9NPC6 264 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHST11Q9NPF2 352 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNGB3Q9NQW8 809 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DYRK4Q9NR20 520 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GDF3Q9NR23 364 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLE4Q9NR33 117 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PXMP2Q9NR77 195 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PHPT1Q9NRX4 125 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 THSD1Q9NS62 852 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GKN1Q9NS71 199 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STAU2Q9NUL3 570 aaKnown RBP eCLIP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UFSP2Q9NUQ7 469 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF701Q9NV72 531 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC38A7Q9NVC3 462 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMOXQ9NWM0 555 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf123Q9NWV4 160 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LYARQ9NX58 379 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MIOSQ9NXC5 875 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms