RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FOXS1O43638 330 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SCO2O43819 266 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 DLX3O60479 287 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ATG12O94817 140 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 NT5EP21589 574 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MATN1P21941 496 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 UQCRFS1P47985 274 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MEOX2P50222 304 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 FOXA1P55317 472 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ATP6V0D1P61421 351 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MC1RQ01726 317 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 BST1Q10588 318 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MRPL49Q13405 166 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CDK10Q15131 360 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC5A12Q1EHB4 618 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RUNDC3AQ59EK9 446 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 KIRREL2Q6UWL6 708 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RAB43Q86YS6 212 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 FLVCR1-AS1Q8TAF5 88 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 YIPF4Q9BSR8 244 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 BDH2Q9BUT1 245 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 REPIN1Q9BWE0 567 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF490Q9ULM2 529 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RPH3ALQ9UNE2 315 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RNF103-CHMP3A0A140T963 221 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 A8MVJ9 347 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 FCHO1O14526 889 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 B3GALT2O43825 422 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 KDM4BO94953 1096 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ETHE1O95571 254 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ALPPP05187 535 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RAC2P15153 192 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MAP2K4P45985 399 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 UCNP55089 124 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RPS15AP62244 130 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 FRMD7Q6ZUT3 714 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CLEC14AQ86T13 490 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CROCCP2Q86T23 111 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CNTN4Q8IWV2 1026 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RBM15BQ8NDT2 890 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TMEM52Q8NDY8 209 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 OR11G2Q8NGC1 345 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TRUB1Q8WWH5 349 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CPNE2Q96FN4 548 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 C5orf34Q96MH7 638 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 LPAR4Q99677 370 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 BCL7BQ9BQE9 202 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 C6orf62Q9GZU0 229 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 ZBTB26Q9HCK0 441 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 HS3ST3B1Q9Y662 390 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 GTF3C1Q12789 2109 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 LRP4O75096 1905 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CBY3A6NI87 242 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 PCDH17O14917 1159 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 SRPX2O60687 465 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 SEC22BO75396 215 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 EEDO75530 441 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 RFPL1O75677 317 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 SULT1C4O75897 302 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 APOL3O95236 402 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 COL8A1P27658 744 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 C19orf57Q0VDD7 668 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 NR6A1Q15406 480 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF658BQ4V348 819 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ANKRD39Q53RE8 183 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CCNYL2Q5T2Q4 361 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ABHD17BQ5VST6 288 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 AGAP7PQ5VUJ5 663 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 FAM180AQ6UWF9 173 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ABHD13Q7L211 337 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 PAGE2Q7Z2X7 111 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ZFP82Q8N141 532 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CPSF7Q8N684 471 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 C1orf52Q8N6N3 182 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 FAR1Q8WVX9 515 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ZPBPQ9BS86 351 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 PPA2Q9H2U2 334 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CDCP1Q9H5V8 836 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 PRTFDC1Q9NRG1 225 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 MBD2Q9UBB5 411 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 A0A087WXM4 84 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 WRBO00258 174 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 TCAPO15273 167 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 TPST1O60507 370 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 KERAO60938 352 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 PTP4A3O75365 173 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 KLF7O75840 302 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 HSPA4LO95757 839 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 APOC3P02656 99 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 YES1P07947 543 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 RBP1P09455 135 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 YAP1P46937 504 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 KCNJ10P78508 379 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 S100A12P80511 92 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 LETMD1Q6P1Q0 360 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 SLCO4C1Q6ZQN7 724 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CHSY3Q70JA7 882 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 CHMP1BQ7LBR1 199 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 OR2Y1Q8NGV0 311 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 KAT2AQ92830 837 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms