RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RGS9BPQ6ZS82 235 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 UNC45BQ8IWX7 931 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 CDH26Q8IXH8 852 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 LIX1Q8N485 282 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 ATAD1Q8NBU5 361 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 LPCAT1Q8NF37 534 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 OR56B2PQ8NGI1 322 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 AGR3Q8TD06 166 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SAP25Q8TEE9 199 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 HEXDCQ8WVB3 486 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 STARD8Q92502 1023 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 C16orf58Q96GQ5 468 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 ZNF560Q96MR9 790 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TSNARE1Q96NA8 513 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 OPALINQ96PE5 141 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TSSK2Q96PF2 358 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 DDX50Q9BQ39 737 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 CCDC77Q9BR77 488 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 ERP44Q9BS26 406 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TTYH2Q9BSA4 534 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 FUT8Q9BYC5 575 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 GCOM2Q9BZD3 368 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 C6orf62Q9GZU0 229 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 C2orf40Q9H1Z8 148 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 VCXQ9H320 206 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 NEK6Q9HC98 313 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TM9SF3Q9HD45 589 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 INIPQ9NRY2 104 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 GLRX2Q9NS18 164 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 NMRK1Q9NWW6 199 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 PAQR5Q9NXK6 330 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 MRPL39Q9NYK5 338 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 FETUBQ9UGM5 382 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 MOSPD1Q9UJG1 213 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 CA5BQ9Y2D0 317 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 AP1M2Q9Y6Q5 423 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 COMMD3-BMI1R4GMX3 469 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 UBN2Q6ZU65 1347 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TTC21AQ8NDW8 1320 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 NSD2O96028 1365 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 DHX57Q6P158 1386 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 CNTLNQ9NXG0 1405 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 THOC2Q8NI27 1593 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 IGLV8-61A0A075B6I0 122 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 IGKV1D-17A0A075B6S4 117 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 C15orf38-AP3S2A0A0A6YYH1 394 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 A0A1B0GVG6 124 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CTAGE15A4D2H0 777 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TRABD2BA6NFA1 517 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZNF879B4DU55 563 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HSBP1L1C9JCN9 74 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DDX39AO00148 427 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 BET1O15155 118 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC22A1O15245 554 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NDUFA2O43678 99 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SELENOFO60613 162 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SERPINB7O75635 380 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ATP5HO75947 161 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 STBD1O95210 358 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GOSR1O95249 250 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SNAPINO95295 136 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 OXSR1O95747 527 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 CRYZL1O95825 349 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MOCS2O96007 188 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ASS1P00966 412 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ASGR1P07306 291 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SNRPAP09012 282 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD34CP0C6C1 535 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GAP43P17677 238 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SYT1P21579 422 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CALB2P22676 271 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MAPK3P27361 379 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 IFNA8P32881 189 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC26A3P40879 764 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC1A1P43005 524 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NT5C2P49902 561 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ARFIP1P53367 373 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MYL6P60660 151 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PSMC5P62195 406 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RBP5P82980 135 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ENPEPQ07075 957 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ACTN3Q08043 901 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 C17orf67Q0P5P2 114 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ASPHQ12797 758 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 XRCC4Q13426 336 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TNK1Q13470 666 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PTCH1Q13635 1447 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CEACAM7Q14002 265 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FRMPD4Q14CM0 1322 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DPYSL2Q16555 572 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 AANATQ16613 207 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MAJINQ3KP22 176 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC39A12Q504Y0 691 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TTMPQ5BVD1 217 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CLVS2Q5SYC1 327 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC22A10Q63ZE4 541 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FAM91A1Q658Y4 838 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAB12Q6IQ22 244 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 IDO2Q6ZQW0 420 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CTAGE6Q86UF2 777 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms