RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 AP4B1Q9Y6B7 739 aa11.33□□□□□ -0.6
SKA1-205ENST00000494518 LINC01387J3KSC0 135 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 TNFSF11O14788 317 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 PDPK1O15530 556 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 RIPK2O43353 540 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 KLF4O43474 513 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 AKAP10O43572 662 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 CXCL13O43927 109 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 CNOT4O95628 575 aaKnown RBP11.32□□□□□ -0.6
SKA1-205ENST00000494518 GSTA1P08263 222 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 ABHD2P08910 425 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 MYL2P10916 166 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 FCGR2AP12318 317 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 GSTM5P46439 218 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 PCYT1AP49585 367 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 PSMD4P55036 377 aaKnown RBP11.32□□□□□ -0.6
SKA1-205ENST00000494518 PRR5P85299 388 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 C17orf67Q0P5P2 114 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 FGFBP1Q14512 234 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 TMEM44Q2T9K0 475 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 CTU2Q2VPK5 515 aaKnown RBP11.32□□□□□ -0.6
SKA1-205ENST00000494518 ZNF385BQ569K4 471 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 CLEC6AQ6EIG7 209 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 ZNF704Q6ZNC4 412 aaPredicted RBP11.32□□□□□ -0.6
SKA1-205ENST00000494518 PLEKHM3Q6ZWE6 761 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 OR6K3Q8NGY3 331 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 CLHC1Q8NHS4 586 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 PLPPR2Q96GM1 343 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 RNF145Q96MT1 663 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 C12orf65Q9H3J6 166 aaKnown RBP11.32□□□□□ -0.6
SKA1-205ENST00000494518 C3orf14Q9HBI5 128 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 FBXO34Q9NWN3 711 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 FIS1Q9Y3D6 152 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 PLCE1Q9P212 2302 aa11.32□□□□□ -0.6
SKA1-205ENST00000494518 STAB1Q9NY15 2570 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 IGLV3-32A0A0A0MS00 114 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 A0A1W2PPM1 405 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 SERTM1A2A2V5 107 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 G3V2L1 256 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 NDUFB5O43674 189 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 SEC22BO75396 215 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 SLITRK5O94991 958 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 NTN1O95631 604 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 OXSR1O95747 527 aaPredicted RBP11.31□□□□□ -0.6
SKA1-205ENST00000494518 ACP2P11117 423 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 PRPS2P11908 318 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 IL11P20809 199 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 PPP2R2BQ00005 443 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 TSC22D1Q15714 1073 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.31□□□□□ -0.6
SKA1-205ENST00000494518 GLYR1Q49A26 553 aaPredicted RBP11.31□□□□□ -0.6
SKA1-205ENST00000494518 BEX5Q5H9J7 111 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 CCNJQ5T5M9 372 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 PRSS57Q6UWY2 283 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 ZYG11AQ6WRX3 759 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 STAC2Q6ZMT1 411 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 FRMD7Q6ZUT3 714 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 GSPT2Q8IYD1 628 aaKnown RBP11.31□□□□□ -0.6
SKA1-205ENST00000494518 MAPK1IP1LQ8NDC0 245 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 OR4C3Q8NH37 302 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 MZB1Q8WU39 189 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 TMEM171Q8WVE6 324 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 ROBO4Q8WZ75 1007 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 GSX2Q9BZM3 304 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 ACTR6Q9GZN1 396 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 TAS2R7Q9NYW3 318 aa11.31□□□□□ -0.6
SKA1-205ENST00000494518 PSMC3IPQ9P2W1 217 aaPredicted RBP11.31□□□□□ -0.6
SKA1-205ENST00000494518 MCTS1Q9ULC4 181 aaKnown RBP11.31□□□□□ -0.6
SKA1-205ENST00000494518 A0A0J9YW62 118 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 A0A1W2PRB8 838 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SS18L1O75177 396 aaPredicted RBP11.3□□□□□ -0.6
SKA1-205ENST00000494518 RSL1D1O76021 490 aaKnown RBP11.3□□□□□ -0.6
SKA1-205ENST00000494518 NKX2-2O95096 273 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SYNGR4O95473 234 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 FAM153BP0C7A2 387 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 ZNF17P17021 662 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SHC1P29353 583 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SFTPDP35247 375 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 ATP5J2P56134 94 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SLC18A2Q05940 514 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 ZNF844Q08AG5 666 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SLC29A2Q14542 456 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 FAM153CQ494X1 144 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 CFAP157Q5JU67 520 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 HBMQ6B0K9 141 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 IKBIPQ70UQ0 350 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 TRIM46Q7Z4K8 759 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 LCA5Q86VQ0 697 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 WDR75Q8IWA0 830 aaKnown RBP11.3□□□□□ -0.6
SKA1-205ENST00000494518 ZNF619Q8N2I2 560 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 CCDC63Q8NA47 563 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 MNS1Q8NEH6 495 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 NUP43Q8NFH3 380 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 OR2V1Q8NHB1 315 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 RAB3IL1Q8TBN0 382 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 JADE3Q92613 823 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 CAVIN3Q969G5 261 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 CHMP6Q96FZ7 201 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 C16orf58Q96GQ5 468 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 GMPPAQ96IJ6 420 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms