RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 DPH1Q9BZG8 443 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 KLHL13Q9P2N7 655 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 B4GAT1O43505 415 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 RAC2P15153 192 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 ADH6P28332 368 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 MAP4K2Q12851 820 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 TRIM46Q7Z4K8 759 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 CD300LFQ8TDQ1 290 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 NAT6Q93015 286 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 MSANTD3Q96H12 275 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 CDK2P24941 298 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 AOAHP28039 575 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 HTR3AP46098 478 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 VEGFBP49765 207 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 NR0B1P51843 470 aaKnown RBP18.05■□□□□ 0.48
COL27A1-207ENST00000494090 RAB40BQ12829 278 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 SFRP4Q6FHJ7 346 aaPredicted RBP18.05■□□□□ 0.48
COL27A1-207ENST00000494090 OR9A4Q8NGU2 314 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 ASB11Q8WXH4 323 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 SFXN2Q96NB2 322 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 TIMM29Q9BSF4 260 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 CWH43Q9H720 699 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 IL20RAQ9UHF4 553 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 MC3RP41968 323 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 HAGHLQ6PII5 290 aaPredicted RBP18.05■□□□□ 0.48
COL27A1-207ENST00000494090 PRRC1Q96M27 445 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 OR51E2Q9H255 320 aa18.05■□□□□ 0.48
COL27A1-207ENST00000494090 MRPL15Q9P015 296 aaKnown RBP18.05■□□□□ 0.48
COL27A1-207ENST00000494090 C4AP0C0L4 1744 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 C4BP0C0L5 1744 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 SDC3O75056 442 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 MRPL41Q8IXM3 137 aaKnown RBP18.04■□□□□ 0.48
COL27A1-207ENST00000494090 OR9A2Q8NGT5 310 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 CDK4P11802 303 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 SLC35F2Q8IXU6 374 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 RRNAD1Q96FB5 475 aaKnown RBP18.04■□□□□ 0.48
COL27A1-207ENST00000494090 RADILQ96JH8 1075 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 PCDHGA6Q9Y5G7 932 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 HTR2AP28223 471 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 GARNL3Q5VVW2 1013 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 B3GNT8Q7Z7M8 397 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 LSMEM2Q8N112 164 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 CCDC71LQ8N9Z2 235 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 OR5W2Q8NH69 310 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 SLC39A13Q96H72 371 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 PPIL3Q9H2H8 161 aaKnown RBP18.04■□□□□ 0.48
COL27A1-207ENST00000494090 SLC39A1Q9NY26 324 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 ABRACLQ9P1F3 81 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 TCRBV5S1A1TA0A578 114 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 C17orf105B2RV13 164 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 WDR5P61964 334 aaKnown RBP18.04■□□□□ 0.48
COL27A1-207ENST00000494090 PRAMEF8Q5VWM4 474 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 PRAMEF7Q5VXH5 474 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 RCBTB1Q8NDN9 531 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 ZNF285Q96NJ3 590 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 THSD1Q9NS62 852 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 PRELID1Q9Y255 219 aa18.04■□□□□ 0.48
COL27A1-207ENST00000494090 GOLGA4Q13439 2230 aaKnown RBP18.04■□□□□ 0.48
COL27A1-207ENST00000494090 KRBA1A5PL33 1030 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 SYT7O43581 403 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 S100PP25815 95 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 SOX3P41225 446 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 RGRP47804 291 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 MZT1Q08AG7 82 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 LYSMD4Q5XG99 296 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 CNIH2Q6PI25 160 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 LATO43561 262 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 RELAQ04206 551 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 NADSYN1Q6IA69 706 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 ARL14Q8N4G2 192 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 SFXN5Q8TD22 340 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 RHBDD1Q8TEB9 315 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 TOX2Q96NM4 488 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 SLC6A16Q9GZN6 736 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 ZNF226Q9NYT6 803 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 SLC6A5Q9Y345 797 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 NAALAD2Q9Y3Q0 740 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 FOXE1O00358 373 aaPredicted RBP18.03■□□□□ 0.48
COL27A1-207ENST00000494090 ACTL6BO94805 426 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 TMEM225BP0DP42 221 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 CST5P28325 142 aaPredicted RBP18.03■□□□□ 0.48
COL27A1-207ENST00000494090 PSPHP78330 225 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 GSG1LQ6UXU4 331 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 LIPIQ6XZB0 460 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 OR5H2Q8NGV7 314 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 ZFP90Q8TF47 636 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 DNAJA3Q96EY1 480 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 ZNF888P0CJ79 500 aaPredicted RBP18.03■□□□□ 0.48
COL27A1-207ENST00000494090 CEBPBP17676 345 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 HTR2BP41595 481 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 CSNK2A1P68400 391 aaPredicted RBP18.03■□□□□ 0.48
COL27A1-207ENST00000494090 DEFB110Q30KQ9 67 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 MCTS1Q9ULC4 181 aaKnown RBP18.03■□□□□ 0.48
COL27A1-207ENST00000494090 B3GNT3Q9Y2A9 372 aa18.03■□□□□ 0.48
COL27A1-207ENST00000494090 CXCL12P48061 93 aa18.02■□□□□ 0.48
COL27A1-207ENST00000494090 CCDC58Q4VC31 144 aa18.02■□□□□ 0.48
COL27A1-207ENST00000494090 ZNF767PQ75MW2 155 aa18.02■□□□□ 0.48
COL27A1-207ENST00000494090 GALNT6Q8NCL4 622 aa18.02■□□□□ 0.48
COL27A1-207ENST00000494090 TMEM239Q8WW34 195 aa18.02■□□□□ 0.48
COL27A1-207ENST00000494090 VRK1Q99986 396 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms