RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SOX3P41225 446 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 RORCP51449 518 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 CTBP2P56545 445 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 STARD6P59095 220 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 PERM1Q5SV97 790 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF613Q6PF04 617 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 TMEM52Q8NDY8 209 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 OR2T33Q8NG76 320 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 COL26A1Q96A83 441 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 ORAI3Q9BRQ5 295 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 ARHGAP9Q9BRR9 750 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 CNIH4Q9P003 139 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 SLC7A7Q9UM01 511 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 ATG2BQ96BY7 2078 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 DRD5P21918 477 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 FGF9P31371 208 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-212ENST00000477970 BDH1Q02338 343 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 FOXD4Q12950 439 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-212ENST00000477970 PRTGQ2VWP7 1150 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-212ENST00000477970 GID4Q8IVV7 300 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 NRMQ8IXM6 262 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 FAM181AQ8N9Y4 354 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 CHAC2Q8WUX2 184 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 TMEM255BQ8WV15 326 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 LRFN3Q9BTN0 628 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 NUAK2Q9H093 628 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 SMURF1Q9HCE7 757 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 CTPS2Q9NRF8 586 aa11.35□□□□□ -0.59
PTPRF-212ENST00000477970 WSB2Q9NYS7 404 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-212ENST00000477970 J3QRE1 110 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 GNSP15586 552 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SKP1P63208 163 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 POU6F2P78424 691 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 DSG2Q14126 1118 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 TMPRSS11FQ6ZWK6 438 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 OR4N5Q8IXE1 308 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 COX18Q8N8Q8 333 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 OR52N1Q8NH53 320 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 HMGB4Q8WW32 186 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 OIT3Q8WWZ8 545 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SLC25A46Q96AG3 418 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF285Q96NJ3 590 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF559Q9BR84 538 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PRR14Q9BWN1 585 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 CHRNA10Q9GZZ6 450 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SYNDIG1Q9H7V2 258 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 A0A1W2PPC4 97 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SRPX2O60687 465 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 HTR2AP28223 471 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 GABRA5P31644 462 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 RPS19P39019 145 aaKnown RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SHC2P98077 582 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 FLYWCH1Q4VC44 716 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 QSOX2Q6ZRP7 698 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SYT13Q7L8C5 426 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PRSS41Q7RTY9 318 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PARGQ86W56 976 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PSD4Q8NDX1 1056 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SNRNP27Q8WVK2 155 aaKnown RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PATE1Q8WXA2 126 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 HS6ST2Q96MM7 605 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 NELL2Q99435 816 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF649Q9BS31 505 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 TCEAL2Q9H3H9 227 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 ENAMQ9NRM1 1142 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 PCDHGB6Q9Y5F9 930 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 BDP1A6H8Y1 2624 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 UNC119BA6NIH7 251 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 TTC36A6NLP5 189 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 LIMS3P0CW19 117 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 LIMS4P0CW20 117 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 THEGLP0DJG4 465 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 NT5EP21589 574 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 HHEXQ03014 270 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 MAPK14Q16539 360 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SPANXN2Q5MJ10 180 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 MRPL2Q5T653 305 aaKnown RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 LAPTM4BQ86VI4 370 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SLC22A16Q86VW1 577 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 C19orf47Q8N9M1 422 aaKnown RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 SIMC1Q8NDZ2 872 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF578Q96N58 590 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 CNPPD1Q9BV87 410 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 TXNL4BQ9NX01 149 aaKnown RBP11.34□□□□□ -0.59
PTPRF-212ENST00000477970 QPCTLQ9NXS2 382 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 KCNE5Q9UJ90 142 aa11.34□□□□□ -0.59
PTPRF-212ENST00000477970 CHST10O43529 356 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 CBX7O95931 251 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 PVRP15151 417 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 GALNSP34059 522 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 RBM34P42696 430 aaKnown RBP11.33□□□□□ -0.6
PTPRF-212ENST00000477970 CDH11P55287 796 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 OR1Q1Q15612 314 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 STEAP3Q658P3 488 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 PAQR6Q6TCH4 344 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 TAF8Q7Z7C8 310 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 SETD6Q8TBK2 473 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 ZDHHC1Q8WTX9 485 aa11.33□□□□□ -0.6
PTPRF-212ENST00000477970 UFD1Q92890 307 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms