RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 CCDC59Q9P031 241 aaKnown RBP9.1□□□□□ -0.95
USP39-214ENST00000474572 HCN3Q9P1Z3 774 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 SLC7A7Q9UM01 511 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 CLCA2Q9UQC9 943 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 CORINQ9Y5Q5 1042 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 CSNK1G3Q9Y6M4 447 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 CDH10Q9Y6N8 788 aa9.1□□□□□ -0.95
USP39-214ENST00000474572 MN1Q10571 1320 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 NPIPA5A0A0B4J1W7 369 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 CLDN25C9JDP6 229 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 NPIPA7E9PJI5 369 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 SOX1O00570 391 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 CLDN4O14493 209 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 DSCR3O14972 297 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 SURF4O15260 269 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TLX2O43763 284 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 OR10H2O60403 315 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 PRAMEF2O60811 474 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 NADKO95544 446 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 NTN1O95631 604 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 RAB36O95755 333 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 IGKV1D-16P01601 117 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 CLPSP04118 112 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MSL3P1P0C860 447 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 NPIPA8P0DM63 369 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 GNSP15586 552 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 CTBP2P56545 445 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 LSM3P62310 102 aaKnown RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 HOXC5Q00444 222 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 OCA2Q04671 838 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MLLT11Q13015 90 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 SERTAD2Q14140 314 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 FGFBP1Q14512 234 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 OR1Q1Q15612 314 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 DEFB133Q30KQ1 61 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 PGGHGQ32M88 737 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TIMM50Q3ZCQ8 353 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 KLHL22Q53GT1 634 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 FIGNL1Q6PIW4 674 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 NPSR1Q6W5P4 371 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 WDR88Q6ZMY6 472 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 GDPGP1Q6ZNW5 385 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 Q6ZNX1 250 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TMPRSS11FQ6ZWK6 438 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 RRM2BQ7LG56 351 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 ARHGAP22Q7Z5H3 698 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 NRMQ8IXM6 262 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MFSD4AQ8N468 514 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 ZNF615Q8N8J6 731 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 KBTBD8Q8NFY9 601 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 RIT1Q92963 219 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 ZHX1-C8orf76Q96EF9 292 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MVB12AQ96EY5 273 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 ZDHHC12Q96GR4 267 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 LRR1Q96L50 414 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 DGAT2Q96PD7 388 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 SLC38A2Q96QD8 506 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 ZNF559Q9BR84 538 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 IER2Q9BTL4 223 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MND1Q9BWT6 205 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 JAM3Q9BX67 310 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 RBCK1Q9BYM8 510 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 OR51E2Q9H255 320 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 DCSTAMPQ9H295 470 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 FN3KQ9H479 309 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TBC1D17Q9HA65 648 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 HHATLQ9HCP6 504 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 HMG20AQ9NP66 347 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TMEM5Q9Y2B1 443 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 MMACHCQ9Y4U1 282 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 TMEM184BQ9Y519 407 aaPredicted RBP9.09□□□□□ -0.95
USP39-214ENST00000474572 RNF215Q9Y6U7 377 aa9.09□□□□□ -0.95
USP39-214ENST00000474572 PCDH15Q96QU1 1955 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 IGHV1OR21-1A0A087WYE8 117 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 A0A0B4J2E0 115 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 A0A1B0GX12 115 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 TMEM129A0AVI4 362 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 ARHGAP33O14559 1287 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 CDC42EP2O14613 210 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 CHP2O43745 196 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 NUDT21O43809 227 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 HYAL3O43820 417 aaPredicted RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 HBQ1P09105 142 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 TGFBR1P36897 503 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 RBM34P42696 430 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 ACAA2P42765 397 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 GPR4P46093 362 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 CLK1P49759 484 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 PSMD4P55036 377 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 FXYD6P3P58550 94 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 MAT1AQ00266 395 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 MLLT1Q03111 559 aaPredicted RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 RAB40BQ12829 278 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 SLC13A2Q13183 592 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 GRM7Q14831 915 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 SPHARQ15513 63 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 ZNHIT3Q15649 155 aaPredicted RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 SNAPC1Q16533 368 aa9.08□□□□□ -0.96
USP39-214ENST00000474572 TSTQ16762 297 aaKnown RBP9.08□□□□□ -0.96
USP39-214ENST00000474572 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms