RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ALG1L2C9J202 215 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 NDUFB5O43674 189 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 KCNK2O95069 426 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 SERPINE1P05121 402 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 LAMP1P11279 417 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 HPGDP15428 266 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 DIO3P55073 304 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 OCRLQ01968 901 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 FOXF2Q12947 444 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 DUSP5Q16690 384 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 SMU1Q2TAY7 513 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 P4HA3Q7Z4N8 544 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 KIRREL3Q8IZU9 778 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 PSMA8Q8TAA3 256 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 MOAP1Q96BY2 351 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 COQ8BQ96D53 544 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 STACQ99469 402 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 BTBD2Q9BX70 525 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 POLDIP3Q9BY77 421 aaKnown RBP17.24■□□□□ 0.35
COL7A1-207ENST00000467985 UBQLN4Q9NRR5 601 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 DUSP22Q9NRW4 184 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 GIN1Q9NXP7 522 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 EDARQ9UNE0 448 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 ZNF337Q9Y3M9 751 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 SNX8Q9Y5X2 465 aa17.24■□□□□ 0.35
COL7A1-207ENST00000467985 SLC22A20A6NK97 555 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 A6NNC1 897 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 TNFRSF21O75509 655 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 OXSR1O95747 527 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 HMGN2P05204 90 aaKnown RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 KRT16P08779 473 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 EFNA1P20827 205 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 PPP2R2AP63151 447 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 SNTB1Q13884 538 aaKnown RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 DAZAP2Q15038 168 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 EXOSC6Q5RKV6 272 aaKnown RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 APOOLQ6UXV4 268 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 MISPQ8IVT2 679 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 UBQLNLQ8IYU4 475 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 OR56A1Q8NGH5 318 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 OR4C3Q8NH37 302 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 FBXO30Q8TB52 745 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 JADE3Q92613 823 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 C16orf58Q96GQ5 468 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 RBM24Q9BX46 236 aaKnown RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 BHLHE41Q9C0J9 482 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 NEUROD4Q9HD90 331 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 RASSF1Q9NS23 344 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 SIRT3Q9NTG7 399 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 NOP53Q9NZM5 478 aaKnown RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 PACSIN3Q9UKS6 424 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-207ENST00000467985 ZNF175Q9Y473 711 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 AP4B1Q9Y6B7 739 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 MED12LQ86YW9 2145 aa17.23■□□□□ 0.35
COL7A1-207ENST00000467985 FAM221AA4D161 298 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 GOSR1O95249 250 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 TGM6O95932 706 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 EPXP11678 715 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 ZNF17P17021 662 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 CPA2P48052 419 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 CCT3P49368 545 aaKnown RBP17.22■□□□□ 0.35
COL7A1-207ENST00000467985 C21orf58P58505 322 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 ABCE1P61221 599 aaKnown RBP17.22■□□□□ 0.35
COL7A1-207ENST00000467985 POU6F2P78424 691 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-207ENST00000467985 EMX2Q04743 252 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 TESK1Q15569 626 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 CHI3L2Q15782 390 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 SPDYE7PQ495Y7 208 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 BHLHB9Q6PI77 547 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 FIGNL1Q6PIW4 674 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 SPNS3Q6ZMD2 512 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 RIMKLAQ8IXN7 391 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 GCNT2Q8N0V5 402 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 SFXN5Q8TD22 340 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 ACTRT2Q8TDY3 377 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 DYDC1Q8WWB3 177 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 CHMP6Q96FZ7 201 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 ACTRT3Q9BYD9 372 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 CLEC4MQ9H2X3 399 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-207ENST00000467985 PIGUQ9H490 435 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 ASIC5Q9NY37 505 aa17.22■□□□□ 0.35
COL7A1-207ENST00000467985 FAF1Q9UNN5 650 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-207ENST00000467985 A0A1W2PNV4 684 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 A0A1W2PQD3 144 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 WDR91A4D1P6 747 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 H3BML4 177 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 SCDO00767 359 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 SLC18A1P54219 525 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 RPS3AP61247 264 aaKnown RBP17.21■□□□□ 0.35
COL7A1-207ENST00000467985 FGFBP1Q14512 234 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 LASP1Q14847 261 aaKnown RBP17.21■□□□□ 0.35
COL7A1-207ENST00000467985 TMEM44Q2T9K0 475 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 CDC73Q6P1J9 531 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 CAMKMTQ7Z624 323 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 GALNT10Q86SR1 603 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 ARFGAP2Q8N6H7 521 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 KRTCAP2Q8N6L1 136 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 NINJ1Q92982 152 aa17.21■□□□□ 0.35
COL7A1-207ENST00000467985 ZBTB8AQ96BR9 441 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms