RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SLC35C2Q9NQQ7 365 aa10.95□□□□□ -0.66
CPSF3-202ENST00000460593 MARCH5Q9NX47 278 aa10.95□□□□□ -0.66
CPSF3-202ENST00000460593 NTMQ9P121 344 aa10.95□□□□□ -0.66
CPSF3-202ENST00000460593 CBLCQ9ULV8 474 aa10.95□□□□□ -0.66
CPSF3-202ENST00000460593 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 A0A1B0GVI7 797 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 FEZF1A0PJY2 475 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 PLPP1O14494 284 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SLC16A5O15375 505 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ATF1P18846 271 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 GDNFP39905 211 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SLC11A1P49279 550 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 HTR4Q13639 388 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 FUT10Q6P4F1 479 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 HDDC2Q7Z4H3 204 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 VRK2Q86Y07 508 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SLC5A11Q8WWX8 675 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SMPDL3AQ92484 453 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 PTP4A1Q93096 173 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 CXorf40BQ96DE9 158 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 NPAS1Q99742 590 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 MACROD1Q9BQ69 325 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 BTBD1Q9H0C5 482 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ENKD1Q9H0I2 346 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SUV39H2Q9H5I1 410 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ISYNA1Q9NPH2 558 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 MRPS18AQ9NVS2 196 aaKnown RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 PIPOXQ9P0Z9 390 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 KIF26AQ9ULI4 1882 aaPredicted RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 OR6C75A6NL08 312 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SURF4O15260 269 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SLCO2B1O94956 709 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 IGF2P01344 180 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 CLUP10909 449 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 MAGEB1P43366 347 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 MTNR1BP49286 362 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 CLDN2P57739 230 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 IKZF1Q13422 519 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ENTPD8Q5MY95 495 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SLC25A30Q5SVS4 291 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 Q6ZVU0 165 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 BTN2A1Q7KYR7 527 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 LILRB1Q8NHL6 650 aaPredicted RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 C16orf58Q96GQ5 468 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 SAMD8Q96LT4 415 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 USB1Q9BQ65 265 aaKnown RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF416Q9BWM5 594 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 ELAC1Q9H777 363 aaKnown RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 AK6Q9Y3D8 172 aaKnown RBP10.94□□□□□ -0.66
CPSF3-202ENST00000460593 DYRK1BQ9Y463 629 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 STON1Q9Y6Q2 735 aa10.94□□□□□ -0.66
CPSF3-202ENST00000460593 PRR23D1E9PI22 279 aaPredicted RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 J3QLW9 94 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 EGFP01133 1207 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SERPIND1P05546 499 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 PRR23D2P0DMB1 279 aaPredicted RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 C1GALT1C1LP0DN25 315 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF19P17023 458 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 LASP1Q14847 261 aaKnown RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FAM110CQ1W6H9 321 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 TMEM220Q6QAJ8 160 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 LINGO2Q7L985 606 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 RRM2BQ7LG56 351 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 NRMQ8IXM6 262 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 RFLNBQ8N5W9 214 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 OR5W2Q8NH69 310 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ACOT12Q8WYK0 555 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SEMA4CQ9C0C4 833 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 OR51V1Q9H2C8 321 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 WDR26Q9H7D7 661 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 H2AFY2Q9P0M6 372 aaPredicted RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 KLK11Q9UBX7 282 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 GMEB2Q9UKD1 530 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SESN1Q9Y6P5 492 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FXYD6-FXYD2A0A087WZ82 144 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ANTXRLA6NF34 631 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 CDC42EP2O14613 210 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 SMAD9O15198 467 aaKnown RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 GYPBP06028 91 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 C8orf89P0DMQ9 161 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 CCR8P51685 355 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 CLDN12P56749 244 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 C2orf68Q2NKX9 166 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FAM74A1Q5RGS3 127 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 MORN1Q5T089 497 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 C18orf63Q68DL7 685 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF613Q6PF04 617 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 PAQR7Q86WK9 346 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 CFAP206Q8IYR0 622 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FBXO22Q8NEZ5 403 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 TMEM255BQ8WV15 326 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ASB12Q8WXK4 309 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FXYD6Q9H0Q3 95 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ZCCHC3Q9NUD5 404 aaKnown RBP10.93□□□□□ -0.66
CPSF3-202ENST00000460593 ASB6Q9NWX5 421 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 BABAM2Q9NXR7 383 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 KIF25Q9UIL4 384 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 FBXL4Q9UKA2 621 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 LHX6Q9UPM6 363 aa10.93□□□□□ -0.66
CPSF3-202ENST00000460593 C5orf42Q9H799 3197 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms