RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 PIGQQ9BRB3 760 aa20.82■□□□□ 0.92
PTPN4-208ENST00000460289 HOXD1Q9GZZ0 328 aa20.82■□□□□ 0.92
PTPN4-208ENST00000460289 FBXO34Q9NWN3 711 aa20.82■□□□□ 0.92
PTPN4-208ENST00000460289 PRSS51A0A1B0GVH4 220 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 DUXAA6NLW8 204 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 ATP6V1C1P21283 382 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 CTSSP25774 331 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 OPRM1P35372 400 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 SOAT1P35610 550 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 EEFSECP57772 596 aaKnown RBP20.81■□□□□ 0.92
PTPN4-208ENST00000460289 CCNJQ5T5M9 372 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 CHMP1BQ7LBR1 199 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 SPATA19Q7Z5L4 167 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 ADGRE4PQ86SQ3 457 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 WNT2BQ93097 391 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 ZFP3Q96NJ6 502 aa20.81■□□□□ 0.92
PTPN4-208ENST00000460289 A0A1W2PQD3 144 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 CLCA1A8K7I4 914 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 SDHDO14521 159 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 ANKRD28O15084 1053 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 POU3F2P20265 443 aaPredicted RBP20.8■□□□□ 0.92
PTPN4-208ENST00000460289 ZNF136P52737 540 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 DGKQP52824 942 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 C6orf120Q7Z4R8 191 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 ZAR1Q86SH2 424 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 WDR75Q8IWA0 830 aaKnown RBP20.8■□□□□ 0.92
PTPN4-208ENST00000460289 CLECL1Q8IZS7 167 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 MEIOBQ8N635 442 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 ZNF527Q8NB42 609 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 OR5AK3PQ8NH89 298 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 STOML1Q9UBI4 398 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 MARCOQ9UEW3 520 aaPredicted RBP20.8■□□□□ 0.92
PTPN4-208ENST00000460289 ZNF337Q9Y3M9 751 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 HCFC1P51610 2035 aa20.8■□□□□ 0.92
PTPN4-208ENST00000460289 MED12Q93074 2177 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 A0A087WZY1 265 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 SYT5O00445 386 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 KLF11O14901 512 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 RCBTB2O95199 551 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 IL18BPO95998 194 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 KITP10721 976 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 PEX19P40855 299 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 OCRLQ01968 901 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 DCST2Q5T1A1 773 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 C9orf106Q8NAJ2 232 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 OR4A15Q8NGL6 344 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 OR7D2Q96RA2 312 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 ACBD3Q9H3P7 528 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 APCP25054 2843 aa20.79■□□□□ 0.92
PTPN4-208ENST00000460289 NUP214P35658 2090 aaPredicted RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 OR2M5A3KFT3 312 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 SCN2BO60939 215 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 TMIGD3P0DMS9 266 aaPredicted RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 MATN1P21941 496 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 EPHA3P29320 983 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 S100A3P33764 101 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 ASCL1P50553 236 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 EEF1A1P68104 462 aaKnown RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 EEF1A1P5Q5VTE0 462 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 POMZP3Q6PJE2 187 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 MTERF4Q7Z6M4 381 aaKnown RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 RELL2Q8NC24 303 aaPredicted RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 ACTRT2Q8TDY3 377 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 WDR55Q9H6Y2 383 aaPredicted RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 AIG1Q9NVV5 245 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 CLCF1Q9UBD9 225 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 KCNN3Q9UGI6 736 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 FOXD3Q9UJU5 478 aaPredicted RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 AP4B1Q9Y6B7 739 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 KCNE3Q9Y6H6 103 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 ABCA12Q86UK0 2595 aa20.78■□□□□ 0.92
PTPN4-208ENST00000460289 INTS1Q8N201 2190 aaKnown RBP20.78■□□□□ 0.92
PTPN4-208ENST00000460289 GOLGA8QA0A0J9YX86 632 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 RNF103-CHMP3A0A140T963 221 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 GOLGA8OA6NCC3 632 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 E9PBE3 544 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 GOLGA8NF8WBI6 632 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 H3BNH8 94 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 GMFGO60234 142 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 CPSF4O95639 269 aaKnown RBP20.77■□□□□ 0.92
PTPN4-208ENST00000460289 AK1P00568 194 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 ALDOCP09972 364 aaKnown RBP20.77■□□□□ 0.92
PTPN4-208ENST00000460289 UQCRC2P22695 453 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 TLE4Q04727 773 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 FLYWCH1Q4VC44 716 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 SPANXN4Q5MJ08 99 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 ARSKQ6UWY0 536 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 GRAMD2AQ8IUY3 354 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 UBQLNLQ8IYU4 475 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 GATSQ8NAP1 163 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 OR5M1Q8NGP8 315 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 PIWIL2Q8TC59 973 aaKnown RBP20.77■□□□□ 0.92
PTPN4-208ENST00000460289 ZNF75CPQ92670 426 aaPredicted RBP20.77■□□□□ 0.92
PTPN4-208ENST00000460289 ARL8AQ96BM9 186 aa20.77■□□□□ 0.92
PTPN4-208ENST00000460289 H3BML4 177 aa20.76■□□□□ 0.91
PTPN4-208ENST00000460289 HCRTR2O43614 444 aa20.76■□□□□ 0.91
PTPN4-208ENST00000460289 ZNF17P17021 662 aa20.76■□□□□ 0.91
PTPN4-208ENST00000460289 UQCRC1P31930 480 aa20.76■□□□□ 0.91
PTPN4-208ENST00000460289 ZNF41P51814 821 aaPredicted RBP20.76■□□□□ 0.91
PTPN4-208ENST00000460289 ATP12AP54707 1039 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms