RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 OIT3Q8WWZ8 545 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 SLC38A4Q969I6 547 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 GTPBP3Q969Y2 492 aaKnown RBP13.17□□□□□ -0.3
USP39-207ENST00000450066 HRASLS5Q96KN8 279 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 SPSB2Q99619 263 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 DGCR6LQ9BY27 220 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 MRPS26Q9BYN8 205 aaKnown RBP13.17□□□□□ -0.3
USP39-207ENST00000450066 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.17□□□□□ -0.3
USP39-207ENST00000450066 SEMA4GQ9NTN9 838 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 SLC39A1Q9NY26 324 aa13.17□□□□□ -0.3
USP39-207ENST00000450066 TMX2-CTNND1H3BSU7 103 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 IL33O95760 270 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 KLK3P07288 261 aaPredicted RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 GTF2A1P52655 376 aaPredicted RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 PLAURQ03405 335 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 CD47Q08722 323 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 PGBD2Q6P3X8 592 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 KLHL17Q6TDP4 642 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 CMIPQ8IY22 773 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 OR4K5Q8NGD3 323 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 SLC35B4Q969S0 331 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 ULBP3Q9BZM4 244 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 UCK2Q9BZX2 261 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 STRADBQ9C0K7 418 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 HOXD1Q9GZZ0 328 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 TESQ9UGI8 421 aaKnown RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 MRTO4Q9UKD2 239 aaKnown RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 NXT1Q9UKK6 140 aaKnown RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 DPPA5A6NC42 116 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 TO15178 435 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 CLPTM1O96005 669 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 PRG2P13727 222 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 SLC5A2P31639 672 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 UGT2B15P54855 530 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 ESRRGP62508 458 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 APOFQ13790 326 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 FGFBP1Q14512 234 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 HLA-DQA1Q5Y7H0 255 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 SLC29A4Q7RTT9 530 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 ZNF614Q8N883 585 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 C17orf47Q8NEP4 570 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 OR4C3Q8NH37 302 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 HDAC2Q92769 488 aaKnown RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 SLC41A3Q96GZ6 507 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 GAL3ST4Q96RP7 486 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 WWTR1Q9GZV5 400 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 PPIEQ9UNP9 301 aaKnown RBP13.16□□□□□ -0.3
USP39-207ENST00000450066 NTNG1Q9Y2I2 539 aa13.16□□□□□ -0.3
USP39-207ENST00000450066 A0A087WUU8 490 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 SAGE2PA6NJ88 616 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 PRKNO60260 465 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 BCAS1O75363 584 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 RFPL3O75679 317 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 SMNDC1O75940 238 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP39-207ENST00000450066 THY1P04216 161 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 GKN3PP0CG01 181 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 ELK4P28324 431 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 LCN1P31025 176 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 RNF144AP50876 292 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 INSM1Q01101 510 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 IL5RAQ01344 420 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 TARDBPQ13148 414 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP39-207ENST00000450066 MEP1AQ16819 746 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 CTU2Q2VPK5 515 aaKnown RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 RBM48Q5RL73 367 aaKnown RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 C6orf141Q5SZD1 244 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 C1orf94Q6P1W5 598 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 CD300LDQ6UXZ3 194 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 GDF7Q7Z4P5 450 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 B3GNT7Q8NFL0 401 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 CNOT9Q92600 299 aaKnown RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 PMEPA1Q969W9 287 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 EFHD2Q96C19 240 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 LMF1Q96S06 567 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 CRB3Q9BUF7 120 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 SEMA4CQ9C0C4 833 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 AKIRIN1Q9H9L7 192 aaPredicted RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 UBQLN4Q9NRR5 601 aa13.15□□□□□ -0.3
USP39-207ENST00000450066 DNAJB12Q9NXW2 375 aaKnown RBP13.15□□□□□ -0.3
USP39-207ENST00000450066 IGHV3-20A0A0C4DH32 117 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 TRAPPC13A5PLN9 417 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 C4orf47A7E2U8 309 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 HTR2AP28223 471 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 GGT2P36268 569 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 IFNGR2P38484 337 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 NUP107P57740 925 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 RAB15P59190 212 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 PSPHP78330 225 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 COX10Q12887 443 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CSRP2Q16527 193 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 KLHL26Q53HC5 615 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CCDC157Q569K6 752 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 DCAF12Q5T6F0 453 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 TMEM205Q6UW68 189 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 ZNF517Q6ZMY9 492 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 ZER1Q7Z7L7 766 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CCDC71Q8IV32 467 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 ZNF441Q8N8Z8 693 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 ZNF527Q8NB42 609 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 NFAM1Q8NET5 270 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms