RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 TMEM44Q2T9K0 475 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 HBMQ6B0K9 141 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ESPNLQ6ZVH7 1005 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 PRIMA1Q86XR5 153 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 WFDC8Q8IUA0 241 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 MISPQ8IVT2 679 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 GTPBP8Q8N3Z3 284 aaPredicted RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 OR6Y1Q8NGX8 325 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 OR4C3Q8NH37 302 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 OR10D3Q8NH80 312 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 OR2V1Q8NHB1 315 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 PPP1R14CQ8TAE6 165 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 SLC9A6Q92581 669 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 OSTF1Q92882 214 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ZBED6CLQ96FA7 236 aaPredicted RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 PLPPR2Q96GM1 343 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 KCNA7Q96RP8 456 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 RTN4RQ9BZR6 473 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ACTR6Q9GZN1 396 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 EQTNQ9NQ60 294 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 UBQLN4Q9NRR5 601 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 FLRT3Q9NZU0 649 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 CLEC4AQ9UMR7 237 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 POLR3HQ9Y535 204 aaPredicted RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 GOLGA8RI6L899 631 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 SLC28A1O00337 649 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 HS3ST1O14792 307 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 RGS14O43566 566 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 CXCL13O43927 109 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 SOX30O94993 753 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 TP53P04637 393 aaPredicted RBP11.9□□□□□ -0.5
HMGB3-204ENST00000448905 THBDP07204 575 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 TUBBP07437 444 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 NGFRP08138 427 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 UROSP10746 265 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 PYGBP11216 843 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 IDUAP35475 653 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 SLC6A8P48029 635 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 CCT5P48643 541 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 RPS4XP62701 263 aaKnown RBP11.9□□□□□ -0.5
HMGB3-204ENST00000448905 ETFDHQ16134 617 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 GRAMD1BQ3KR37 738 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 TMEM201Q5SNT2 666 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 ALKBH2Q6NS38 261 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 ZCCHC12Q6PEW1 402 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 APOOLQ6UXV4 268 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 C22orf34Q6ZV56 151 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 GGNQ86UU5 652 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 LILRA2Q8N149 483 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 C17orf53Q8N3J3 647 aaPredicted RBP11.9□□□□□ -0.5
HMGB3-204ENST00000448905 NUP43Q8NFH3 380 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 SPATA3Q8NHX4 192 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 PIK3R3Q92569 461 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 MDFIQ99750 246 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 GSTO2Q9H4Y5 243 aa11.9□□□□□ -0.5
HMGB3-204ENST00000448905 ESRP2Q9H6T0 727 aaKnown RBP11.9□□□□□ -0.5
HMGB3-204ENST00000448905 FLNAP21333 2647 aaKnown RBP11.9□□□□□ -0.51
HMGB3-204ENST00000448905 GXYLT2A0PJZ3 443 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 C7orf72A4D263 438 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 GJE1A6NN92 205 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 KIAA1324LA8MWY0 1029 aaPredicted RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 UBFD1O14562 309 aaKnown RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 PDPK1O15530 556 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 NKX2-2O95096 273 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 OPN1LWP04000 364 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 ALOX5P09917 674 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 PSMB1P20618 241 aaKnown RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 LOXP28300 417 aaPredicted RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 SLC18A2Q05940 514 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 HSPB3Q12988 150 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 RNPS1Q15287 305 aaKnown RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 PRSS53Q2L4Q9 553 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 CTU2Q2VPK5 515 aaKnown RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 ZNF551Q7Z340 670 aaPredicted RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 SZRD1Q7Z422 152 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 TRABD2AQ86V40 505 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 IFT20Q8IY31 132 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 HSD17B8Q92506 261 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 AKAP1Q92667 903 aaKnown RBP eCLIP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 GTPBP3Q969Y2 492 aaKnown RBP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 ARL8AQ96BM9 186 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 PPCDCQ96CD2 204 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 HOXD1Q9GZZ0 328 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 C1orf109Q9NX04 203 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 SH3BP4Q9P0V3 963 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 LAMP3Q9UQV4 416 aa11.89□□□□□ -0.51
HMGB3-204ENST00000448905 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.89□□□□□ -0.51
HMGB3-204ENST00000448905 A0A1W2PRB8 838 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 SHISA8B8ZZ34 492 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 H3BNH8 94 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 TNFSF11O14788 317 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 PRKD3O94806 890 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 OXSR1O95747 527 aaPredicted RBP11.88□□□□□ -0.51
HMGB3-204ENST00000448905 CHEK2O96017 543 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 IGKV1D-16P01601 117 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 IL32P24001 234 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 PRIM2P49643 509 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 FOXA1P55317 472 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 DNAJB13P59910 316 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms