RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HMGB1P1B2RPK0 211 aaPredicted RBP13.77□□□□□ -0.21
LIMS3-201ENST00000437679 GMFGO60234 142 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 SCN2BO60939 215 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 TOXO94900 526 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 IL2RAP01589 272 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 MATN1P21941 496 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 MSX1P28360 303 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 TIMP3P35625 211 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 STARP49675 285 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 SLC25A35Q3KQZ1 300 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 SLC9B1Q4ZJI4 515 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 DCST2Q5T1A1 773 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 SEM1Q6ZVN7 128 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 ZAR1Q86SH2 424 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 GATSQ8NAP1 163 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF527Q8NB42 609 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 ACTRT2Q8TDY3 377 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 DYDC1Q8WWB3 177 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 C1GALT1C1Q96EU7 318 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 MAELQ96JY0 434 aaKnown RBP13.77□□□□□ -0.21
LIMS3-201ENST00000437679 SPOCK3Q9BQ16 436 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 HOXD1Q9GZZ0 328 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 CALHM2Q9HA72 323 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 GPR45Q9Y5Y3 372 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 A0A1W2PQD3 144 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 KDM4EB2RXH2 506 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 LINC01387J3KSC0 135 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 PEPDP12955 493 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 IDO1P14902 403 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 POU3F2P20265 443 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 UQCRC2P22695 453 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 CEACAM8P31997 349 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 LHX2P50458 406 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 B3GALT5-AS1P59052 145 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 RPS26P62854 115 aaKnown RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 PHC1P78364 1004 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 BCL2A1Q16548 175 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 GLYR1Q49A26 553 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 MEX3BQ6ZN04 569 aaKnown RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 MCEMP1Q8IX19 187 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 CLEC4FQ8N1N0 589 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 GLB1L3Q8NCI6 653 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 TNIP2Q8NFZ5 429 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 OR5D16Q8NGK9 328 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 GOT1L1Q8NHS2 421 aaPredicted RBP13.76□□□□□ -0.21
LIMS3-201ENST00000437679 TEX37Q96LM6 180 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 C7orf26Q96N11 449 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 TUBA1CQ9BQE3 449 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 PIGQQ9BRB3 760 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 BTNL2Q9UIR0 455 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 KCNE3Q9Y6H6 103 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 DOCK7Q96N67 2140 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 HCFC1P51610 2035 aa13.76□□□□□ -0.21
LIMS3-201ENST00000437679 A0A087WZY1 265 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MBD3L4A6NDZ8 208 aaPredicted RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MBD3L3A6NE82 208 aaPredicted RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MBD3L5A6NJ08 208 aaPredicted RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 H3BNH8 94 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 DVL2O14641 736 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 DIAPH2O60879 1101 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 AK1P00568 194 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 PGRP06401 933 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF708P17019 499 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 CHI3L1P36222 383 aaPredicted RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 DGKQP52824 942 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 CLDN18P56856 261 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 PPP2R2AP63151 447 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 LRRC74AQ0VAA2 488 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 GSTA3Q16772 222 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 FLYWCH1Q4VC44 716 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 PDCD4Q53EL6 469 aaKnown RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 CHMP1BQ7LBR1 199 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MAVSQ7Z434 540 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MTERF4Q7Z6M4 381 aaKnown RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 LIX1LQ8IVB5 337 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MEIOBQ8N635 442 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 TRIML2Q8N7C3 387 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 MBD3L2Q8NHZ7 208 aaPredicted RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 CCDC115Q96NT0 180 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 OR52E6Q96RD3 313 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 ENKD1Q9H0I2 346 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 INTS9Q9NV88 658 aaKnown RBP13.75□□□□□ -0.21
LIMS3-201ENST00000437679 EXD2Q9NVH0 621 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 USH1CQ9Y6N9 552 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 ABCA12Q86UK0 2595 aa13.75□□□□□ -0.21
LIMS3-201ENST00000437679 NPIPA5A0A0B4J1W7 369 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 OR2M5A3KFT3 312 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 CLCA1A8K7I4 914 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 C9JVG2 144 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 NPIPA7E9PJI5 369 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF195O14628 629 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 UBDO15205 165 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 SLC22A3O75751 556 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 AGR2O95994 175 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 NPIPA8P0DM63 369 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 BMP5P22003 454 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 IL12AP29459 219 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ATP12AP54707 1039 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 EEFSECP57772 596 aaKnown RBP13.74□□□□□ -0.21
LIMS3-201ENST00000437679 TFF3Q07654 80 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms