RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SFTPCP11686 197 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NCF1P14598 390 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TAC1P20366 129 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 IL10P22301 178 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 F8A1P23610 371 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SERPINB1P30740 379 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HPDP32754 393 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HSD17B3P37058 310 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HNF4AP41235 474 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SKP1P63208 163 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 REEP5Q00765 189 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 IRF8Q02556 426 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RGS1Q08116 209 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CHIT1Q13231 466 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SRSF6Q13247 344 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NCF4Q15080 339 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RBBP5Q15291 538 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PDK4Q16654 411 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 C18orf21Q32NC0 220 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TECRLQ5HYJ1 363 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PAGE2BQ5JRK9 111 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 MLIPQ5VWP3 458 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 LCN10Q6JVE6 187 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 FAM199XQ6PEV8 388 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 FAM198BQ6UWH4 519 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RRM2BQ7LG56 351 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PRSS45Q7RTY3 260 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 VN1R4Q7Z5H5 301 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CROCCP2Q86T23 111 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RAB43Q86YS6 212 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PLD3Q8IV08 490 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RIBC1Q8N443 379 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 MREGQ8N565 214 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SNX31Q8N9S9 440 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TTLQ8NG68 377 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NT5CQ8TCD5 201 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 AENQ8WTP8 325 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM170AQ8WVE7 144 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 STARD8Q92502 1023 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NEIL2Q969S2 332 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 UBE2E3Q969T4 207 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ESAMQ96AP7 390 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CHCHD6Q9BRQ6 235 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 EFCAB11Q9BUY7 163 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM109Q9BVC6 243 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 WDR54Q9H977 334 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 STARD5Q9NSY2 213 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 COPG2Q9UBF2 871 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PEMTQ9UBM1 199 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 OPTCQ9UBM4 332 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 DHCR7Q9UBM7 475 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CAMK2AQ9UQM7 478 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ANGPTL3Q9Y5C1 460 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 VPS13AQ96RL7 3174 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 AHCTF1Q8WYP5 2266 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 FEZF1A0PJY2 475 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ANKDD1BA6NHY2 528 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 KDM4EB2RXH2 506 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 H0YIG0 161 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 UBXN8O00124 270 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL41O60662 606 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 KLF7O75840 302 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NSA2O95478 260 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SHBGP04278 402 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CYC1P08574 325 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SLC35G6P0C7Q6 338 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SMIM10L1P0DMW3 83 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 GFAPP14136 432 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ALOX12P18054 663 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ITGAXP20702 1163 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 BSGP35613 385 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CCR10P46092 362 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 OR1D4P47884 311 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NAA20P61599 178 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SLC18A2Q05940 514 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TGM3Q08188 693 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CDC20Q12834 499 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 DOC2AQ14183 400 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HERC3Q15034 1050 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HKDC1Q2TB90 917 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 XKR6Q5GH73 641 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 C1orf189Q5VU69 101 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 LIPJQ5W064 366 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HEPHL1Q6MZM0 1159 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 IL20RBQ6UXL0 311 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TMIGD1Q6UXZ0 262 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SH2D5Q6ZV89 423 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TMPRSS11BQ86T26 416 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SLC22A9Q8IVM8 553 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 APLFQ8IW19 511 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TEX9Q8N6V9 391 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 OR4N2Q8NGD1 307 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 OR2Y1Q8NGV0 311 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 APOBEC4Q8WW27 367 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 EXT2Q93063 718 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL29Q96CT2 875 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SMIM10Q96HG1 83 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 C10orf90Q96M02 699 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 NTMT1Q9BV86 223 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 SF3B5Q9BWJ5 86 aaKnown RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms