RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ESRP2Q9H6T0 727 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 RANGRFQ9HD47 186 aaPredicted RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 FAM60AQ9NP50 221 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 PTGFRNQ9P2B2 879 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 STOX2Q9P2F5 926 aaPredicted RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 GALPQ9UBC7 116 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 RABL2BQ9UNT1 228 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 PTRH2Q9Y3E5 179 aaKnown RBP5.88□□□□□ -1.47
USP40-202ENST00000409945 CEPT1Q9Y6K0 416 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 ZFHX4Q86UP3 3567 aa5.88□□□□□ -1.47
USP40-202ENST00000409945 TCRBV9S1A1TA0A576 114 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 WDR91A4D1P6 747 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 OR2A25A4D2G3 310 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 MYO1GB0I1T2 1018 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 GUCA1CO95843 209 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ALPPP05187 535 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FBLP22087 321 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 PSMB5P28074 263 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 IMPA1P29218 277 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 CRABP2P29373 138 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 GCH1P30793 250 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 SSTR1P30872 391 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 OTX2P32243 289 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 RORAP35398 523 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ARL1P40616 181 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 CCR8P51685 355 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 CDKN2DP55273 166 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 HNRNPH2P55795 449 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 RGS1Q08116 209 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 NAE1Q13564 534 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ZIC1Q15915 447 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 KRT71Q3SY84 523 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 LACTB2Q53H82 288 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 LGSNQ5TDP6 509 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 CYHR1Q6ZMK1 362 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ZNF517Q6ZMY9 492 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 HPS6Q86YV9 775 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FAM185AQ8N0U4 392 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 CSNK1A1LQ8N752 337 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 TEX45Q8NA69 505 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 OR14L1PQ8NHC6 308 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 PRSS3P2Q8NHM4 247 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FLVCR1-AS1Q8TAF5 88 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 PGM2Q96G03 612 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 URB1-AS1Q96HZ7 61 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 RBBP8Q99708 897 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ROPN1BQ9BZX4 212 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 CENPHQ9H3R5 247 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 WDR54Q9H977 334 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ROPN1Q9HAT0 212 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 CLK4Q9HAZ1 481 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 PLSCR4Q9NRQ2 329 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 SIRT3Q9NTG7 399 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 DHCR7Q9UBM7 475 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 ZNF282Q9UDV7 671 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 RALYQ9UKM9 306 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 PDE10AQ9Y233 779 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 KLHL20Q9Y2M5 609 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 MRPS18BQ9Y676 258 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 PCM1Q15154 2024 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 SYCE1LA8MT33 242 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 INHBAP08476 426 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 PTGER1P34995 402 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 MDH1P40925 334 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 RAB10P61026 200 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 CDKL1Q00532 357 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FASTKQ14296 549 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 FASTKD3Q14CZ7 662 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 SRSF7Q16629 238 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP40-202ENST00000409945 SMN1Q16637 294 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 EIF2S3LQ2VIR3 472 aaKnown RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 COLEC12Q5KU26 742 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 APLFQ8IW19 511 aaPredicted RBP5.87□□□□□ -1.47
USP40-202ENST00000409945 PPFIBP2Q8ND30 876 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 OR2Y1Q8NGV0 311 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 TM9SF4Q92544 642 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FBXL8Q96CD0 374 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 GBP5Q96PP8 586 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 NRTNQ99748 197 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 AIF1LQ9BQI0 150 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 DERL2Q9GZP9 239 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 DRC3Q9H069 523 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 FAM107BQ9H098 131 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ATG10Q9H0Y0 220 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 C14orf105Q9NVL8 296 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 ANKRD10Q9NXR5 420 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 OARD1Q9Y530 152 aa5.87□□□□□ -1.47
USP40-202ENST00000409945 MGAQ8IWI9 3026 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 A0A1W2PPV9 198 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 ARGFXA6NJG6 315 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 FAM159BA6NKW6 160 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 H0YGG7 62 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 RIPK2O43353 540 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 ERAL1O75616 437 aaKnown RBP5.86□□□□□ -1.47
USP40-202ENST00000409945 CCDC166P0CW27 439 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 G6PDP11413 515 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 GNAZP19086 355 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 ZNF10P21506 573 aaPredicted RBP5.86□□□□□ -1.47
USP40-202ENST00000409945 F8A1P23610 371 aa5.86□□□□□ -1.47
USP40-202ENST00000409945 SLC26A3P40879 764 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms