RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 BMP4P12644 408 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SOX3P41225 446 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 MINDY4Q4G0A6 757 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 APOOLQ6UXV4 268 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ADGRF3Q8IZF5 1079 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OR4K17Q8NGC6 315 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OR1J1Q8NGS3 322 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SPRYD4Q8WW59 207 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 RPL3LQ92901 407 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF582Q96NG8 517 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PIKFYVEQ9Y2I7 2098 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 TRAV18A0A075B6X5 111 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 FABP7O15540 132 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ERI3O43414 337 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ALPLP05186 524 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 HTR2CP28335 458 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 GLO1Q04760 184 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 NRG4Q8WWG1 115 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ADAM7Q9H2U9 754 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SEC61A2Q9H9S3 476 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 EXOSC3Q9NQT5 275 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 C1GALT1Q9NS00 363 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 C2orf42Q9NWW7 574 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF230Q9UIE0 474 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 V9GY05 133 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PXDNQ92626 1479 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 H7BY64 318 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 MTNR1BP49286 362 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OTUD1Q5VV17 481 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 POMZP3Q6PJE2 187 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM220Q6QAJ8 160 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PLA2G15Q8NCC3 412 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OR4E2Q8NGC2 313 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SLC25A36Q96CQ1 311 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 BCO1Q9HAY6 547 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ANKRD66B4E2M5 251 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SIX3O95343 332 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-206ENST00000409809 DAOAP59103 153 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 VAMP3Q15836 100 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 OR6F1Q8NGZ6 308 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 HLA-CQ95604 372 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 KAZALD1Q96I82 304 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF558Q96NG5 402 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 DCTP40126 519 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 LY6KQ17RY6 165 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 LRRC26Q2I0M4 334 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 ENPP6Q6UWR7 440 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 ADGRA1Q86SQ6 560 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 OR52N2Q8NGI0 321 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 OR5AK3PQ8NH89 298 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SEC16AO15027 2179 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 TK1P04183 234 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SELENOWP63302 87 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM135Q86UB9 458 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 OR9A4Q8NGU2 314 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 PMM1Q92871 262 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 DCLRE1CQ96SD1 692 aaKnown RBP12.21□□□□□ -0.45
COL6A3-206ENST00000409809 PIGVQ9NUD9 493 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 PUS1Q9Y606 427 aaKnown RBP eCLIP12.21□□□□□ -0.45
COL6A3-206ENST00000409809 A6NIZ1 184 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 GJE1A6NN92 205 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 AGPAT2O15120 278 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 FZD7O75084 574 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 JUNDP17535 347 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 RAP1BP61224 184 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SEC61A1P61619 476 aaKnown RBP12.21□□□□□ -0.45
COL6A3-206ENST00000409809 RNF4P78317 190 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 APOFQ13790 326 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 OR4K14Q8NGD5 310 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 C16orf78Q8WTQ4 265 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SLAMF9Q96A28 289 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 C20orf85Q9H1P6 137 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF442Q9H7R0 627 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 DUS2Q9NX74 493 aaKnown RBP12.21□□□□□ -0.45
COL6A3-206ENST00000409809 SLC22A14Q9Y267 594 aa12.21□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM212A6NML5 194 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 ERVK-21P61565 698 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 WDR5P61964 334 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 MGAT3Q09327 533 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 SNTB1Q13884 538 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 FAM182AQ5T1J6 154 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 ZBTB37Q5TC79 503 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 SGK3Q96BR1 496 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 FAM83CQ9BQN1 747 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 NIPSNAP2O75323 286 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 ACVR1BP36896 505 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 RAB7AP51149 207 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 APOBEC3HQ6NTF7 200 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 ZC3H3Q8IXZ2 948 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 CHRDL1Q9BU40 450 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 IL21RQ9HBE5 538 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 PURGQ9UJV8 347 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 TRAV20A0A0B4J274 112 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 RNASET2O00584 256 aaKnown RBP12.21□□□□□ -0.46
COL6A3-206ENST00000409809 RFC3P40938 356 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 MIB2Q96AX9 1013 aa12.21□□□□□ -0.46
COL6A3-206ENST00000409809 LPLP06858 475 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 BTG3Q14201 252 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 GUK1Q16774 197 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 OR1J2Q8NGS2 313 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms