RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MLIPQ5VWP3 458 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 LIPIQ6XZB0 460 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLC36A4Q6YBV0 504 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 CEACAM19Q7Z692 300 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 VRK2Q86Y07 508 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SERPINA12Q8IW75 414 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLC39A11Q8N1S5 342 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF454Q8N9F8 522 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF680Q8NEM1 530 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OR14C36Q8NHC7 312 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OVCA2Q8WZ82 227 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SAMD8Q96LT4 415 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OPALINQ96PE5 141 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLX1AQ9BQ83 275 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 CACNG6Q9BXT2 260 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF436Q9C0F3 470 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 FBXL3Q9UKT7 428 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TEX13CA0A0J9YWL9 993 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 KANTRA0A1W2PQU2 76 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZC3H12DA2A288 527 aaKnown RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 RLN2P04090 185 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 GKN3PP0CG01 181 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ARAFP10398 606 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 RORAP35398 523 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SEC13P55735 322 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TDGQ13569 410 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZXDCQ2QGD7 858 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLX4IPQ5VYV7 408 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TMIEQ8NEW7 156 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OR6F1Q8NGZ6 308 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SPRYD4Q8WW59 207 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TINAGL1Q9GZM7 467 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 MS4A7Q9GZW8 240 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 NEUROD4Q9HD90 331 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 KRCC1Q9NPI7 259 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLC23A1Q9UHI7 598 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ERVK-19Q9WJR5 959 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 A0A075B6Q4 140 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SLC16A5O15375 505 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 PROM1O43490 865 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 C6P13671 934 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 HSD3B1P14060 373 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 HSD3B2P26439 372 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 MAOBP27338 520 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 LIM2P55344 173 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 FLI1Q01543 452 aaPredicted RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 P2RY14Q15391 338 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SYT9Q86SS6 491 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 IL17RDQ8NFM7 739 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 STOML3Q8TAV4 291 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 MRPS30Q9NP92 439 aaKnown RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 NDRG2Q9UN36 371 aaKnown RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 BRCA2P51587 3418 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 RP1P56715 2156 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 TRBV5-3A0A0A0MS03 114 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 A0A1B0GVT2 93 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 ERVH48-1M5A8F1 160 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 CHST10O43529 356 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 HRO43593 1189 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 HLA-DQA2P01906 255 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SRPRAP08240 638 aaKnown RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SPARCP09486 303 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 UGT2B10P36537 528 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 KHKP50053 298 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SIM1P81133 766 aaPredicted RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 COL19A1Q14993 1142 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 Q3ZCU0 254 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF600Q6ZNG1 722 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 MSANTD1Q6ZTZ1 278 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 SLITRK4Q8IW52 837 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 ZFAND1Q8TCF1 268 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 UBTD2Q8WUN7 234 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF689Q96CS4 500 aaPredicted RBP11.21□□□□□ -0.61
HMGB1-206ENST00000405805 PPP1R16AQ96I34 528 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 LMLNQ96KR4 655 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 FOLH1BQ9HBA9 442 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 HHATLQ9HCP6 504 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 IKZF2Q9UKS7 526 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 WDR45Q9Y484 360 aa11.21□□□□□ -0.61
HMGB1-206ENST00000405805 MIA3Q5JRA6 1907 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 FAM171A2A8MVW0 826 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 H0YIV9 168 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 AGPAT2O15120 278 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 NUDT14O95848 222 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 MBP02144 154 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 ELAVL4P26378 380 aaKnown RBP11.21□□□□□ -0.62
HMGB1-206ENST00000405805 SOX2P48431 317 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 CRYZQ08257 329 aaKnown RBP11.21□□□□□ -0.62
HMGB1-206ENST00000405805 SSX1Q16384 188 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 C4orf46Q504U0 113 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 TCTN3Q6NUS6 607 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 FIGNL1Q6PIW4 674 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 FRRS1Q6ZNA5 592 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 RTL4Q6ZR62 310 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 TMPRSS9Q7Z410 1059 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 KRT77Q7Z794 578 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 OR4C6Q8NH72 309 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 AKR7LQ8NHP1 331 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 DPH1Q9BZG8 443 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 CWH43Q9H720 699 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms