RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 A8MUA0 341 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 E9PQ18 207 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PDE9AO76083 593 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PGM3O95394 542 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CD46P15529 392 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SLC6A8P48029 635 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CLK1P49759 484 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CCL11P51671 97 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 DSCR4P56555 118 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 MERTKQ12866 999 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TP53BP2Q13625 1128 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 DNAL1Q4LDG9 190 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TMEM156Q8N614 296 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF527Q8NB42 609 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ST6GALNAC3Q8NDV1 305 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ST8SIA1Q92185 356 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 C1GALT1C1Q96EU7 318 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TMEM19Q96HH6 336 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TAAR6Q96RI8 345 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TREX2Q9BQ50 279 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ANKRD19PQ9H560 264 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZFP64Q9NPA5 681 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 FBXO34Q9NWN3 711 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 HPF1Q9NWY4 346 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF443Q9Y2A4 671 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 KLRC4-KLRK1H3BQV0 150 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PEX1O43933 1283 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZIC3O60481 467 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 NPIPB7O75200 414 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SLC25A12O75746 678 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CBR3O75828 277 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PRSS23O95084 383 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 H6PDO95479 791 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 EDN3P14138 238 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 LIMS1P48059 325 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 P2RX1P51575 399 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 FBXW4P57775 412 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 MAPK14Q16539 360 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PLEKHN1Q494U1 663 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SAMD4BQ5PRF9 694 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF621Q6ZSS3 439 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TSEN54Q7Z6J9 526 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CYP4Z2PQ8N1L4 340 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 FAM109AQ8N4B1 249 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 COX18Q8N8Q8 333 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 C11orf65Q8NCR3 313 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 RBM15BQ8NDT2 890 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 GPR32P1Q8NGA4 272 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 FBXO27Q8NI29 283 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 GPR119Q8TDV5 335 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PIK3R3Q92569 461 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 THOC1Q96FV9 657 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 GPR137Q96N19 417 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 DCBLD2Q96PD2 775 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 BTBD10Q9BSF8 475 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 DCAF13Q9NV06 445 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 AP4B1Q9Y6B7 739 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ARHGAP21Q5T5U3 1957 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 DNPH1O43598 174 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CRYABP02511 175 aaKnown RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 NME5P56597 212 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 CDK6Q00534 326 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 NPTX1Q15818 432 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SYPL1Q16563 259 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 PLPPR5Q32ZL2 321 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF836Q6ZNA1 936 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 FKBP9P1Q75LS8 142 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 GTPBP8Q8N3Z3 284 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SIRT6Q8N6T7 355 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 OR5D16Q8NGK9 328 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 OR4C3Q8NH37 302 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 POC1BQ8TC44 478 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ASB9Q96DX5 294 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 RNF122Q9H9V4 155 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ACER3Q9NUN7 267 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 ACTR3BQ9P1U1 418 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 MYOCOSA0A1B0GUC4 107 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 EVPLLA8MZ36 301 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 C9JVG2 144 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 WWP2O00308 870 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF208O43345 1280 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 BCAS1O75363 584 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 UBOX5O94941 541 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CPSF4O95639 269 aaKnown RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 HOXD4P09016 255 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 MST1P26927 711 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 GSK3BP49841 420 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 SCARB2Q14108 478 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 PDK3Q15120 406 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 EIPR1Q53HC9 387 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 INTS11Q5TA45 600 aaKnown RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 HLA-DQA1Q5Y7H0 255 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 EIF3MQ7L2H7 374 aaKnown RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 MDGA2Q7Z553 956 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 COMTD1Q86VU5 262 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 PLCZ1Q86YW0 608 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ADPRHL1Q8NDY3 354 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms