RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 SSX1Q16384 188 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 OCLNQ16625 522 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 NDUFA9Q16795 377 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 FLYWCH1Q4VC44 716 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 C14orf28Q4W4Y0 310 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 SLC27A4Q6P1M0 643 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 MBOAT2Q6ZWT7 520 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 SPEM1Q8N4L4 309 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 OR51Q1Q8NH59 317 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 CLIP3Q96DZ5 547 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 TMEM80Q96HE8 168 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 PLEKHA8Q96JA3 519 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 Q96MT0 163 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 NELL2Q99435 816 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 YIPF2Q9BWQ6 316 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 DPH1Q9BZG8 443 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 PLCL2Q9UPR0 1127 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 TMEM265A0A087WTH1 108 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 A0A1B0GVT2 93 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 LILRA5A6NI73 299 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 ARHGAP33O14559 1287 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 CSO75390 466 aaKnown RBP13.96□□□□□ -0.17
GPC3-202ENST00000394299 PIAS2O75928 621 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 OR5F1O95221 314 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 THBS1P07996 1170 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 IFNA8P32881 189 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 FAM53BQ14153 422 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 OGFOD3Q6PK18 319 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 NPSR1Q6W5P4 371 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 RASSF6Q6ZTQ3 369 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 ADCK1Q86TW2 530 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 SLC25A45Q8N413 288 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 DRAXINQ8NBI3 349 aaPredicted RBP13.96□□□□□ -0.17
GPC3-202ENST00000394299 POGLUT1Q8NBL1 392 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 RCBTB1Q8NDN9 531 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 GRHL3Q8TE85 626 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 CRELD1Q96HD1 420 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 LMF1Q96S06 567 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.96□□□□□ -0.17
GPC3-202ENST00000394299 SLIRPQ9GZT3 109 aaKnown RBP13.96□□□□□ -0.17
GPC3-202ENST00000394299 PDE7BQ9NP56 450 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 SATB2Q9UPW6 733 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 ERVK-19Q9WJR5 959 aa13.96□□□□□ -0.17
GPC3-202ENST00000394299 RPL36Q9Y3U8 105 aaKnown RBP13.96□□□□□ -0.17
GPC3-202ENST00000394299 A8MUA0 341 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 LRRTM2O43300 516 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 LYPD3O95274 346 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 NSA2O95478 260 aaKnown RBP13.96□□□□□ -0.18
GPC3-202ENST00000394299 IFNA16P05015 189 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 HBQ1P09105 142 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 MAKP20794 623 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 CD1CP29017 333 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 NDUFAF6Q330K2 333 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 B3GLCTQ6Y288 498 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 TTLL10Q6ZVT0 673 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 ARHGAP22Q7Z5H3 698 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 ZNF321PQ8N8H1 164 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 OR52I1Q8NGK6 324 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 ITFG2Q969R8 447 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 SAMD8Q96LT4 415 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 OPALINQ96PE5 141 aa13.96□□□□□ -0.18
GPC3-202ENST00000394299 DHCR7Q9UBM7 475 aaKnown RBP13.96□□□□□ -0.18
GPC3-202ENST00000394299 KLF4O43474 513 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 PIPP12273 146 aaPredicted RBP13.95□□□□□ -0.18
GPC3-202ENST00000394299 CSTF2P33240 577 aaKnown RBP eCLIP13.95□□□□□ -0.183e-7■■■■■ 31.5
GPC3-202ENST00000394299 IFNGR2P38484 337 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 ETV5P41161 510 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 ETV1P50549 477 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 NCF4Q15080 339 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 DGUOKQ16854 277 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 ZCCHC12Q6PEW1 402 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 C16orf87Q6PH81 154 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 HSDL2Q6YN16 418 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 BBS1Q8NFJ9 593 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 BORCS5Q969J3 196 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 VSTM2LQ96N03 204 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 DGAT2Q96PD7 388 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 BCL7BQ9BQE9 202 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 CHRDQ9H2X0 955 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 OSGIN1Q9UJX0 560 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 LSM2Q9Y333 95 aaKnown RBP13.95□□□□□ -0.18
GPC3-202ENST00000394299 ARID1BQ8NFD5 2236 aaPredicted RBP13.95□□□□□ -0.18
GPC3-202ENST00000394299 TRAPPC13A5PLN9 417 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 TLCD2A6NGC4 264 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 K7ESF4 209 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 RFPL3O75679 317 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 RPLP0P05388 317 aaKnown RBP13.95□□□□□ -0.18
GPC3-202ENST00000394299 ZGLP1P0C6A0 271 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 GAS1P54826 345 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 FXYD6P3P58550 94 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 TMED1Q13445 227 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 EIPR1Q53HC9 387 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 ZNF367Q7RTV3 350 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 IGFN1Q86VF2 1251 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 RANBP3LQ86VV4 465 aaPredicted RBP13.95□□□□□ -0.18
GPC3-202ENST00000394299 ATCAYQ86WG3 371 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 TMCO5AQ8N6Q1 288 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 C16orf52Q8NHV5 167 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 TMEM163Q8TC26 289 aa13.95□□□□□ -0.18
GPC3-202ENST00000394299 AHCYL2Q96HN2 611 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms