RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NME2P22392 152 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 BLKP51451 505 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 CTXN1P60606 82 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 IER5LQ5T953 404 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 ARHGAP40Q5TG30 622 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM234Q8WY98 164 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 HHIPL1Q96JK4 782 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF300Q96RE9 604 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 RBFOX1Q9NWB1 397 aaKnown RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 VAPAQ9P0L0 249 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 PCDHGA5Q9Y5G8 931 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 A0A1W2PRU2 124 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 FOXA1P55317 472 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 TBPL1P62380 186 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 PLGLB1Q02325 96 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 RAB40BQ12829 278 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 OSTM1Q86WC4 334 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 LMO3Q8TAP4 145 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SLC16A10Q8TF71 515 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 TAAR8Q969N4 342 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 HRH3Q9Y5N1 445 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 BCL9O00512 1426 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 NPIPA2E9PIF3 369 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 NPIPA3F8WFD2 350 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SLC16A5O15375 505 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SRPX2O60687 465 aaPredicted RBP11.21□□□□□ -0.62
SYNPO-202ENST00000394243 UBE2NLQ5JXB2 153 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 TMEM156Q8N614 296 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 ARPC5LQ9BPX5 153 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 DIP2CQ9Y2E4 1556 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 RTCAO00442 366 aaKnown RBP11.21□□□□□ -0.62
SYNPO-202ENST00000394243 PPP1R2P9O14990 202 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SCO2O43819 266 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 HTR3BO95264 441 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 GSTM4Q03013 218 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 PSAPL1Q6NUJ1 521 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 LETMD1Q6P1Q0 360 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 FAM122BQ7Z309 247 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SLC9B2Q86UD5 537 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 PDZD3Q86UT5 571 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF417Q8TAU3 575 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 CPT1CQ8TCG5 803 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 SFXN5Q8TD22 340 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 RNF128Q8TEB7 428 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 C14orf79Q96F83 325 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 CXXC1Q9P0U4 656 aaPredicted RBP11.21□□□□□ -0.62
SYNPO-202ENST00000394243 NAALAD2Q9Y3Q0 740 aa11.21□□□□□ -0.62
SYNPO-202ENST00000394243 GABRPO00591 440 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 KIAA0355O15063 1070 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 TSPAN6O43657 245 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 F3P13726 295 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PCGF2P35227 344 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 THBS2P35442 1172 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 DUSP7Q16829 419 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 LRRC25Q8N386 305 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 METTL27Q8N6F8 245 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 RCBTB1Q8NDN9 531 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 OR7G3Q8NG95 312 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 OR13F1Q8NGS4 319 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 FUBP1Q96AE4 644 aaKnown RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SEC22AQ96IW7 307 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SMOQ99835 787 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 NMNAT2Q9BZQ4 307 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 OR11A1Q9GZK7 315 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 C11orf54Q9H0W9 315 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GSTO2Q9H4Y5 243 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 NIPAL2Q9H841 368 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GORASP2Q9H8Y8 452 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SAGE1Q9NXZ1 904 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 DKKL1Q9UK85 242 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ATG12O94817 140 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SERPINA5P05154 406 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 FABP6P51161 128 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GRM2Q14416 872 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GPR148Q8TDV2 347 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 NKX6-2Q9C056 277 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SDHAF2Q9NX18 166 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 B3GNT2Q9NY97 397 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ARGFXA6NJG6 315 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 NPIPA7E9PJI5 369 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 APOA2P02652 100 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 NPIPA8P0DM63 369 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 RAC2P15153 192 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 HOXB9P17482 250 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PCSK6P29122 969 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PSPHP78330 225 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 FLI1Q01543 452 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SLC14A1Q13336 389 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 HTR4Q13639 388 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ST8SIA4Q92187 359 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PTGES2Q9H7Z7 377 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SLC7A7Q9UM01 511 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 SOWAHBA6NEL2 793 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 MPC1LP0DKB6 136 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 TAS2R19P59542 299 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PLP2Q04941 152 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ARHGAP1Q07960 439 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GPR50Q13585 617 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ZC3H3Q8IXZ2 948 aaKnown RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF461Q8TAF7 563 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms