RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PIGXQ8TBF5 258 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SAMD8Q96LT4 415 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ZFYVE21Q9BQ24 234 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 FBRSQ9HAH7 460 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ATP13A2Q9NQ11 1180 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CALML5Q9NZT1 146 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 PHF11Q9UIL8 331 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CD207Q9UJ71 328 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF223Q9UK11 482 aaPredicted RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SCML1Q9UN30 329 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SHISA3A0PJX4 238 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SGK494L7N484 410 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 UBE2IP63279 158 aaKnown RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CSTF1Q05048 431 aaKnown RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 RAB40BQ12829 278 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 EIF2B5Q13144 721 aaKnown RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 BAK1Q16611 211 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 PRICKLE4Q2TBC4 344 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 VASNQ6EMK4 673 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ANKRD9Q96BM1 317 aaPredicted RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 TIMP4Q99727 224 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SLC30A2Q9BRI3 323 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 HCAR1Q9BXC0 346 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SLC13A4Q9UKG4 626 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CBLCQ9ULV8 474 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SAGE2PA6NJ88 616 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 TNFRSF10CO14798 259 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 MAP3K8P41279 467 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 MADCAM1Q13477 382 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 LARS2Q15031 903 aaKnown RBP12.43□□□□□ -0.42
CCDC3-202ENST00000378839 DEFB110Q30KQ9 67 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 DCST2Q5T1A1 773 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 MRPL2Q5T653 305 aaKnown RBP12.43□□□□□ -0.42
CCDC3-202ENST00000378839 CA13Q8N1Q1 262 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 GPBAR1Q8TDU6 330 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 SLC37A2Q8TED4 501 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 HMGB4Q8WW32 186 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 PIGUQ9H490 435 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 MED20Q9H944 212 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 HINT3Q9NQE9 182 aaKnown RBP12.43□□□□□ -0.42
CCDC3-202ENST00000378839 CLDND1Q9NY35 253 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 MAT2BQ9NZL9 334 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 OR2W5A6NFC9 320 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 DUXAA6NLW8 204 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 AP3D1O14617 1153 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 RFPL3O75679 317 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 OR5F1O95221 314 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 DLGAP3O95886 979 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 SDC2P34741 201 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 PSPHP78330 225 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 C1orf61Q13536 156 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 PGGHGQ32M88 737 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 HSDL2Q6YN16 418 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 ARHGEF39Q8N4T4 335 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 SIRT6Q8N6T7 355 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 SLC25A46Q96AG3 418 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 DPH1Q9BZG8 443 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 ANKRD19PQ9H560 264 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 HRASLS2Q9NWW9 162 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 TOR4AQ9NXH8 423 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 PTGFRNQ9P2B2 879 aa12.43□□□□□ -0.42
CCDC3-202ENST00000378839 TGFBR3LH3BV60 316 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 HRKO00198 91 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 HYAL3O43820 417 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ATP1B1P05026 303 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 TBXA2RP21731 343 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 STAT5AP42229 794 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RGS19P49795 217 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 KLHL22Q53GT1 634 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 Q6ZS52 159 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RNF44Q7L0R7 432 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RSC1A1Q92681 617 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 GDF15Q99988 308 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ARHGAP9Q9BRR9 750 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 CPNE5Q9HCH3 593 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 MSRAQ9UJ68 235 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 TMEM129A0AVI4 362 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 TYRP1P17643 537 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RORCP51449 518 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 CDH11P55287 796 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 VSX2P58304 361 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF791Q3KP31 576 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 SPANXN2Q5MJ10 180 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 GDPGP1Q6ZNW5 385 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 PEX5LQ8IYB4 626 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 MSLNLQ96KJ4 702 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 NEDD4LQ96PU5 975 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RBCK1Q9BYM8 510 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 UBQLN3Q9H347 655 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 SSR3Q9UNL2 185 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 KNL1Q8NG31 2342 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 LOC110117498-PIK3R3F6TDL0 507 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 J3QRE1 110 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RGS5O15539 181 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 GALR3O60755 368 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 NT5EP21589 574 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 SLC1A3P43003 542 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 HNRNPA0Q13151 305 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms