RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 YES1P07947 543 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 AP2S1P53680 142 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 TEKQ02763 1124 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 HSPB3Q12988 150 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 SMN1Q16637 294 aaKnown RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 MRM1Q6IN84 353 aaKnown RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 FAM180BQ6P0A1 224 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 P3H2Q8IVL5 708 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 MCATQ8IVS2 390 aaKnown RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 TBC1D19Q8N5T2 526 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 PARP16Q8N5Y8 322 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 AMER2Q8N7J2 671 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 CELF2-AS1Q8N7Q2 184 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 GALNT6Q8NCL4 622 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 PSD4Q8NDX1 1056 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 FAM83FQ8NEG4 500 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 APH1BQ8WW43 257 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 SLC38A4Q969I6 547 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF501Q96CX3 271 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 MS4A6EQ96DS6 147 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 TRAF4Q9BUZ4 470 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 FAIM2Q9BWQ8 316 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 CEP295Q9C0D2 2601 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 KLHL31Q9H511 634 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 ACOT13Q9NPJ3 140 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 ATP13A2Q9NQ11 1180 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 PRDM7Q9NQW5 492 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 SIRT3Q9NTG7 399 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 TEX10Q9NXF1 929 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-203ENST00000374116 SNX7Q9UNH6 387 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 RNF6Q9Y252 685 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 PEX16Q9Y5Y5 336 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 C9orf172C9J069 976 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 C4orf51C9J302 202 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 CCNB2O95067 398 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 MT-ND2P03891 347 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 SERPIND1P05546 499 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 BCHEP06276 602 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF28P17035 718 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 SSR2P43308 183 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 CCT3P49368 545 aaKnown RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 PWWP2BQ6NUJ5 590 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 TNFAIP8L2Q6P589 184 aaPredicted RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 KMT5CQ86Y97 462 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 DEPDC4Q8N2C3 294 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 MFSD9Q8NBP5 474 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 UBE2FQ969M7 185 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 DDX28Q9NUL7 540 aaKnown RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 RLIMQ9NVW2 624 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 WDR70Q9NW82 654 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 PCDHGB6Q9Y5F9 930 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 SCN3AQ9NY46 2000 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 H0YGG7 62 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 J3KTA2 159 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 CDK2AP1O14519 115 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 P2RX6O15547 441 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 BRINP1O60477 761 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 B4GALT2O60909 372 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 MAP2K4P45985 399 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ARF3P61204 181 aaPredicted RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 RPS26P62854 115 aaKnown RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 MC2RQ01718 297 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 CYP27C1Q4G0S4 372 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ABHD17CQ6PCB6 329 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 XKRXQ6PP77 449 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 CARFQ8N187 725 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF655Q8N720 491 aaPredicted RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 APOBEC4Q8WW27 367 aaKnown RBP13.29□□□□□ -0.28
HMGA1-203ENST00000374116 UCN3Q969E3 161 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 TMCO6Q96DC7 493 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 TMEM19Q96HH6 336 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 SLC46A1Q96NT5 459 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 OR2A5Q96R48 311 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF607Q96SK3 696 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 NIPSNAP1Q9BPW8 284 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ZFYVE21Q9BQ24 234 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 C17orf62Q9BQA9 187 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 C5AR2Q9P296 337 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 KCND3Q9UK17 655 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 RARRES3Q9UL19 164 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 ASB4Q9Y574 426 aa13.29□□□□□ -0.28
HMGA1-203ENST00000374116 SDK2Q58EX2 2172 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 HMGN4O00479 90 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 PCDH17O14917 1159 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 OR2B3O76000 313 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 RECKO95980 971 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 CBLP22681 906 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 PSMB9P28065 219 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 S100A5P33763 92 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 LSM3P62310 102 aaKnown RBP13.28□□□□□ -0.28
HMGA1-203ENST00000374116 SLC9A5Q14940 896 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 NDUFAF5Q5TEU4 345 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 RNF44Q7L0R7 432 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 PPP1R3BQ86XI6 285 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 CACTIN-AS1Q8N1I8 211 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 SLC38A9Q8NBW4 561 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 KBTBD8Q8NFY9 601 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 OR2L5Q8NG80 312 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 MYDGFQ969H8 173 aa13.28□□□□□ -0.28
HMGA1-203ENST00000374116 MAPKAP1Q9BPZ7 522 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms