RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SLC9B1P1A6NJY1 282 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 CEBPBP17676 345 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 HTR1FP30939 366 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 GPR1P46091 355 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 SFXN4Q6P4A7 337 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 LCTLQ6UWM7 567 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 C16orf62Q7Z3J2 963 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 CDH24Q86UP0 819 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 ZNF687Q8N1G0 1237 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 PIAS4Q8N2W9 510 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 SUN3Q8TAQ9 357 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 ACOT12Q8WYK0 555 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 AIF1LQ9BQI0 150 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 ALG8Q9BVK2 526 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 C1QTNF7Q9BXJ2 289 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 NKIRAS2Q9NYR9 191 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 EXOGQ9Y2C4 368 aaKnown RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 LCMT2O60294 686 aaKnown RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 REM1O75628 298 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 MT-ND4P03905 459 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 HRGP04196 525 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 DRD5P21918 477 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 CTNNB1P35222 781 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 IFNGR2P38484 337 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 MTNR1BP49286 362 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 DGCR2P98153 550 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 ST3GAL2Q16842 350 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 RPTNQ6XPR3 784 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 MRPL43Q8N983 215 aaKnown RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 SETD7Q8WTS6 366 aaKnown RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 UBL7Q96S82 380 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-202ENST00000341753 SPATA5L1Q9BVQ7 753 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 C1QTNF6Q9BXI9 259 aa20.89■□□□□ 0.93
TRIM28-202ENST00000341753 TEX51A0A1B0GUA7 166 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 RPS10-NUDT3A0A1W2PQS6 291 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 CDC42EP2O14613 210 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 PGRMC2O15173 223 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 SOX30O94993 753 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 MRPL3P09001 348 aaKnown RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 SSR2P43308 183 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 EPHA5P54756 1037 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 E2F1Q01094 437 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 RPL6Q02878 288 aaKnown RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 ZSWIM7Q19AV6 140 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 DIO2Q92813 273 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 PPP1R16AQ96I34 528 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 SORCS2Q96PQ0 1159 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 HCAR1Q9BXC0 346 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 TTTY10Q9BZA0 68 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 KCNN2Q9H2S1 579 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 POLMQ9NP87 494 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 SLC35C2Q9NQQ7 365 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 TMEM5Q9Y2B1 443 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 TCF20Q9UGU0 1960 aaKnown RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 FZD7O75084 574 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 KELP23276 732 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 VIPR2P41587 438 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 RNF144AP50876 292 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 SLC16A1P53985 500 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 KLHL12Q53G59 568 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 CXXC5Q7LFL8 322 aaKnown RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 TOMM5Q8N4H5 51 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 OR10H4Q8NGA5 316 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 OR13C5Q8NGS8 318 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 TIMP4Q99727 224 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 CACNG6Q9BXT2 260 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 ACSS1Q9NUB1 689 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-202ENST00000341753 BABAM2Q9NXR7 383 aa20.88■□□□□ 0.93
TRIM28-202ENST00000341753 THY1P04216 161 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 RBMS1P29558 406 aaKnown RBP20.87■□□□□ 0.93
TRIM28-202ENST00000341753 PTGS2P35354 604 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 ACVR1BP36896 505 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 GCGRP47871 477 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 CLCNKAP51800 687 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 CLDN2P57739 230 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 AANATQ16613 207 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 GPR139Q6DWJ6 353 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 ZNF793Q6ZN11 406 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 CEACAM19Q7Z692 300 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 GIMAP1Q8WWP7 306 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 OSTF1Q92882 214 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 NXPE3Q969Y0 559 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 RAD51AP1Q96B01 352 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 DTD2Q96FN9 168 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 RHBGQ9H310 441 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 TM7SF3Q9NS93 570 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 MRPL15Q9P015 296 aaKnown RBP20.87■□□□□ 0.93
TRIM28-202ENST00000341753 COL4A3Q01955 1670 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 KIF26AQ9ULI4 1882 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-202ENST00000341753 OR5K3A6NET4 321 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 PRR23AA6NEV1 266 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 SSNA1O43805 119 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 DNASE1P24855 282 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 RFX3P48380 749 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 PLEKHM3Q6ZWE6 761 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 IZUMO1Q8IYV9 350 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 GALNT11Q8NCW6 608 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 RGMAQ96B86 450 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 PINK1Q9BXM7 581 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 ZCCHC2Q9C0B9 1178 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms