RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 IZUMO1Q8IYV9 350 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 OR4N4Q8N0Y3 316 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 SIRT6Q8N6T7 355 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 FAM98AQ8NCA5 519 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 BEST4Q8NFU0 473 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 OR2L3Q8NG85 312 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 PFN4Q8NHR9 129 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 SPPL3Q8TCT6 385 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 DEDD2Q8WXF8 326 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 FGF13Q92913 245 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 DNAJA3Q96EY1 480 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 ARHGAP9Q9BRR9 750 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 B3GAT2Q9NPZ5 323 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 NUDT15Q9NV35 164 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 RBFOX1Q9NWB1 397 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 STMN3Q9NZ72 180 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 MARK1Q9P0L2 795 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 E9PQ18 207 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 PSMD9O00233 223 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 CDC42EP2O14613 210 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 PROM1O43490 865 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 CD3GP09693 182 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 SRP9P49458 86 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 TPBGQ13641 420 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 GLYR1Q49A26 553 aaPredicted RBP12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 TMEM35AQ53FP2 167 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 RASSF6Q6ZTQ3 369 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 NRROSQ86YC3 692 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 C10orf53Q8N6V4 93 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 LRRC17Q8N6Y2 441 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 SLC35A4Q96G79 324 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 ACTRT3Q9BYD9 372 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 SLC6A20Q9NP91 592 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 TESQ9UGI8 421 aaKnown RBP12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 STON1Q9Y6Q2 735 aa12.04□□□□□ -0.48
HMGCS1-201ENST00000325110 TCF20Q9UGU0 1960 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 CLUP10909 449 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 ELK1P19419 428 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 RPL4P36578 427 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 RPS5P46782 204 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 EXOSC7Q15024 291 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 SLC48A1Q6P1K1 146 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 GJD3Q8N144 294 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 LRRC25Q8N386 305 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR7G2Q8NG99 324 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR13C2Q8NGS9 318 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 UBQLN3Q9H347 655 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 A0A0B4J203 849 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 CENPVL1A0A0U1RR11 272 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 SHISA3A0PJX4 238 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 GMFGO60234 142 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 TOXO94900 526 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 FCER2P06734 321 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 MAB21L1Q13394 359 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 ZNF761Q86XN6 746 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR13C5Q8NGS8 318 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR4C6Q8NH72 309 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 TSACCQ96A04 125 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 WDFY2Q96P53 400 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 KXD1Q9BQD3 176 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 TRIM36Q9NQ86 728 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 WSB2Q9NYS7 404 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 NLGN3Q9NZ94 848 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 NPAP1Q9NZP6 1156 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 COL4A6Q14031 1691 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 DUXAA6NLW8 204 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 RIIAD1A6NNX1 92 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 GTPBP1O00178 669 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 CDC123O75794 336 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 F3P13726 295 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 PVRP15151 417 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 GRPRP30550 384 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 HCCSP53701 268 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.03□□□□□ -0.482e-9■■□□□ 12.3
HMGCS1-201ENST00000325110 TRMT12Q53H54 448 aaKnown RBP12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 CEP78Q5JTW2 689 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 FAM205BPQ63HN1 556 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 ESPNLQ6ZVH7 1005 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR4K14Q8NGD5 310 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 OR6C4Q8NGE1 309 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 CLIP3Q96DZ5 547 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 LIPT1Q9Y234 373 aa12.03□□□□□ -0.48
HMGCS1-201ENST00000325110 A0A0B4J293 547 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 UNC119BA6NIH7 251 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 PEX12O00623 359 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 SSNA1O43805 119 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 ARSBP15848 533 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 DRD5P21918 477 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 CCR4P51679 360 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 ZNF155Q12901 538 aaPredicted RBP12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 DUSP5Q16690 384 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 ADAMTSL4Q6UY14 1074 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 OR6K6Q8NGW6 343 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 GRPEL2Q8TAA5 225 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 BADQ92934 168 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 RFT1Q96AA3 541 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 UPRTQ96BW1 309 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 RNF31Q96EP0 1072 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 MSLNLQ96KJ4 702 aa12.02□□□□□ -0.48
HMGCS1-201ENST00000325110 NDC1Q9BTX1 674 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms