RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 QRSL1Q9H0R6 528 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 SULT1B1O43704 296 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ADAMTS4O75173 837 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ALDOCP09972 364 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 ADPRMQ3LIE5 342 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 FBXO46Q6PJ61 603 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 TAS1R1Q7RTX1 841 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CLDN22Q8N7P3 220 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 MDGA1Q8NFP4 955 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 TERB2Q8NHR7 220 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 MYLIPQ8WY64 445 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 LINC00597Q9H2U6 94 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 MAN2C1Q9NTJ4 1040 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF225Q9UK10 706 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 GJD2Q9UKL4 321 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 POLHQ9Y253 713 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CITO14578 2027 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 SHANK3Q9BYB0 1731 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 A0A0A6YYH2 397 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CPED1A4D0V7 1026 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 TMEM221A6NGB7 291 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 A6NJ64 397 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 RNF13O43567 381 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 RNGTTO60942 597 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 PEX14O75381 377 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 SNRNP70P08621 437 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 DDCP20711 480 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 BDKRB2P30411 391 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 TAS2R31P59538 309 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZXDBP98169 803 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ALG10BQ5I7T1 473 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 MANEALQ5VSG8 457 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF585AQ6P3V2 769 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 ZNF546Q86UE3 836 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 C12orf40Q86WS4 652 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 CNTN4Q8IWV2 1026 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 OR52E2Q8NGJ4 325 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 LMX1AQ8TE12 382 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 PCNPQ8WW12 178 aaKnown RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 C11orf54Q9H0W9 315 aaPredicted RBP10.86□□□□□ -0.67
VPS39-201ENST00000318006 KCNK12Q9HB15 430 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 PCDHA9Q9Y5H5 950 aa10.86□□□□□ -0.67
VPS39-201ENST00000318006 E9PI62 339 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 RFXAPO00287 272 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 PHYHO14832 338 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 H2BFMP0C1H6 154 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 BATFQ16520 125 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CLVS2Q5SYC1 327 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 GPR157Q5UAW9 335 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 OR7G3Q8NG95 312 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 ARRDC2Q8TBH0 407 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SLC35B4Q969S0 331 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 F2RL3Q96RI0 385 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CLSTN3Q9BQT9 956 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SLC38A1Q9H2H9 487 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SRA1Q9HD15 236 aaKnown RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 EMC7Q9NPA0 242 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SDHAF3Q9NRP4 125 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 ABRACLQ9P1F3 81 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 LRFN1Q9P244 771 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 PSORS1C1Q9UIG5 152 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CA5BQ9Y2D0 317 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 A0A0D9SG52 128 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 TOR1AO14656 332 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 GPR37L1O60883 481 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 BPNT1O95861 308 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 PRKCAP17252 672 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 NFYAP23511 347 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 ZNF140P52738 457 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 CRYZQ08257 329 aaKnown RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 CST6Q15828 149 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 ACSM3Q53FZ2 586 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 AVPI1Q5T686 147 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 KIAA0319Q5VV43 1072 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 RFPL4BQ6ZWI9 263 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 OR5AK2Q8NH90 309 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 KIAA1143Q96AT1 154 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 CENPOQ9BU64 300 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CXCL16Q9H2A7 254 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 RAD51DO75771 328 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 DRD2P14416 443 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CBLP22681 906 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 POLR2IP36954 125 aaKnown RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 DHPSP49366 369 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 ARRB1P49407 418 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 PIN1Q13526 163 aaPredicted RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 PTPRRQ15256 657 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 FCN2Q15485 313 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SLC29A4Q7RTT9 530 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 ENTHD1Q8IYW4 607 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CPXM2Q8N436 756 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 KCTD12Q96CX2 325 aaKnown RBP10.85□□□□□ -0.67
VPS39-201ENST00000318006 SLC39A13Q96H72 371 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 SAMD8Q96LT4 415 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 CDC6Q99741 560 aa10.85□□□□□ -0.67
VPS39-201ENST00000318006 MEGF11A6BM72 1044 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 SOX1O00570 391 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 ANKRD28O15084 1053 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 SLC16A8O95907 504 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 CFIP05156 583 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms