RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ABHD13Q7L211 337 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 UBALD2Q8IYN6 164 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OXER1Q8TDS5 423 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CCM2Q9BSQ5 444 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CACNG6Q9BXT2 260 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TM6SF1Q9BZW5 370 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MMP17Q9ULZ9 603 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ELOVL7A1L3X0 281 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 IFITM10A6NMD0 228 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PPP1R3GB7ZBB8 358 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 HOXB5P09067 269 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 APEX1P27695 318 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OTX1P32242 354 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PBX2P40425 430 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GNG10P50151 68 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GRM3Q14832 879 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OXA1LQ15070 435 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SGCAQ16586 387 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 FLYWCH1Q4VC44 716 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CCBE1Q6UXH8 406 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CEACAM19Q7Z692 300 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GPR135Q8IZ08 494 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC38A6Q8IZM9 456 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TCTEX1D1Q8N7M0 179 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OR10D4PQ8NGN7 298 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 DYNC2LI1Q8TCX1 351 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM46BQ96A09 425 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GMPPAQ96IJ6 420 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SPATA33Q96N06 139 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TOLLIPQ9H0E2 274 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 DNAJC5Q9H3Z4 198 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 FZD8Q9H461 694 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 NPAP1Q9NZP6 1156 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 NSD2O96028 1365 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM221A6NGB7 291 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 OR2AG2A6NM03 316 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 SMPD2O60906 423 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 MT-ND4LP03901 98 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 CATP04040 527 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 H1F0P07305 194 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ALPIP09923 528 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 AADACP22760 399 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GPR3P46089 330 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 CPT1AP50416 773 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ELLP55199 621 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 PRAMEF14Q5SWL7 426 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 AFMIDQ63HM1 303 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GPRIN1Q7Z2K8 1008 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 SLFN11Q7Z7L1 901 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 VRK3Q8IV63 474 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 OR52R1Q8NGF1 315 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 OR5L1Q8NGL2 311 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 OR13D1Q8NGV5 346 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 STON2Q8WXE9 905 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ZUFSPQ96AP4 578 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HRASLSQ9HDD0 168 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GDE1Q9NZC3 331 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GRHPRQ9UBQ7 328 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 FETUBQ9UGM5 382 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ZMIZ1Q9ULJ6 1067 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 PCDHB7Q9Y5E2 793 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 NFS1Q9Y697 457 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HPP00738 406 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HLA-DPB1P04440 258 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 DEFA4P12838 97 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 BMP8BP34820 402 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 TTPAP49638 278 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 PCBD1P61457 104 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GCSAMLQ5JQS6 135 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM171A1Q5VUB5 890 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 CAPN13Q6MZZ7 669 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 FBXL19Q6PCT2 694 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 BMP8AQ7Z5Y6 402 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 MUC15Q8N387 334 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 COX18Q8N8Q8 333 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 CHST14Q8NCH0 376 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 OR6T1Q8NGN1 323 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 RAB3CQ96E17 227 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 COA1Q9GZY4 146 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ENKD1Q9H0I2 346 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 POLR2J3Q9H1A7 115 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ABCG5Q9H222 651 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HSFX1Q9UBD0 423 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 PRG4Q92954 1404 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GAGE10A6NGK3 116 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ACOD1A6NK06 481 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 GRXCR1A8MXD5 290 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ADAM20O43506 726 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 STK16O75716 305 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 DNAL4O96015 105 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HLA-DQB2P05538 268 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 BPGMP07738 259 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 KDELR2P33947 212 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 SMSP52788 366 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 PDK2Q15119 407 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 HGSNATQ68CP4 663 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 USP17L2Q6R6M4 530 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 NOXA1Q86UR1 476 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 ZDHHC17Q8IUH5 632 aa7.24□□□□□ -1.25
LIMCH1-201ENST00000313860 RNF149Q8NC42 400 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms